View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17422_high_11 (Length: 416)
Name: NF17422_high_11
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 279 - 409
Target Start/End: Complemental strand, 54986766 - 54986636
Alignment:
| Q |
279 |
cctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaattggtgtgtggaagataatgatcgaagagacaataac |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54986766 |
cctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaattggtgtgtggaagataatgatcgaagagacaataac |
54986667 |
T |
|
| Q |
379 |
cgagattctcttcatcgtgttccctatgcta |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
54986666 |
cgagattctcttcatcgtgttccctatgcta |
54986636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 54987092 - 54986990
Alignment:
| Q |
76 |
agttcaaattgaaataactctatcgcctcaaattaagcagcttgaatttctactgactcgttaatgaattaaatgtataattttctcagtaacatcaatt |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54987092 |
agttcaaattgaaataactctatcgcctcaaattaagcagcttgaatttctactgactcgttaatgaattaaatgtataattttctcagcaacatcaatt |
54986993 |
T |
|
| Q |
176 |
gtg |
178 |
Q |
| |
|
||| |
|
|
| T |
54986992 |
gtg |
54986990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 54986991 - 54986938
Alignment:
| Q |
230 |
tgtcttgcatatagatatagcagcttctaaactacacattactgtttggcctgt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54986991 |
tgtcttgcatatagatatagcagcttctaaactagtcattactgtttggcctgt |
54986938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 409
Target Start/End: Complemental strand, 7884089 - 7883959
Alignment:
| Q |
279 |
cctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaattggtgtgtggaagataatgatcgaagagacaataac |
378 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||| ||||| ||||| |||||| | || |||| ||||||||| ||||||||||| |||||||| || || |
|
|
| T |
7884089 |
cctgtgaatagatgaaggtgccaagaattgcaatggcagctccaagagcattgatgggttgaagtggtgtgtgaaagataatgatggaagagactattac |
7883990 |
T |
|
| Q |
379 |
cgagattctcttcatcgtgttccctatgcta |
409 |
Q |
| |
|
|| ||||||||||| || || ||||||||| |
|
|
| T |
7883989 |
agaaattctcttcattgtatttcctatgcta |
7883959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 35588860 - 35588819
Alignment:
| Q |
17 |
caaaaacttctatcaatttgctctctgtatactttctttaca |
58 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35588860 |
caaaaacttctatcaatttgctctctgcatactttctttaca |
35588819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University