View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_high_23 (Length: 258)
Name: NF17422_high_23
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 32229943 - 32229727
Alignment:
| Q |
38 |
tatcatatcgaaagtcaaggtaatagtagagtaacatgagttaaatatctccttaaggaacttattttcacccacacacatgttatatatgttatatcat |
137 |
Q |
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| T |
32229943 |
tatcatatcgaaagtcaaggtaatagtagaggaacatgagttaaatatctccttaaggaatttattttcacccacacacatgttat----gttatatcat |
32229848 |
T |
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| Q |
138 |
tatttcaatcttattagccaaccaatggactgtcaaactcaaagtcacgatcgatcttgatgtgtgcttttctatatcatcaaaatagaatggtagtttt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32229847 |
tatttcaatcttattagccaaccaatggactgtcaaactcaaagtcacgatcgatcttgatgtgtgcttttctatatcatcaaaatagaatggtagtttt |
32229748 |
T |
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| Q |
238 |
catatacgttttgatggtttt |
258 |
Q |
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||||||||||||||||||||| |
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| T |
32229747 |
catatacgttttgatggtttt |
32229727 |
T |
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