View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17422_high_24 (Length: 257)

Name: NF17422_high_24
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17422_high_24
NF17422_high_24
[»] chr3 (28 HSPs)
chr3 (4-239)||(968648-968883)
chr3 (153-238)||(1940567-1940652)
chr3 (152-239)||(1931141-1931228)
chr3 (154-239)||(1936969-1937054)
chr3 (156-218)||(1022487-1022549)
chr3 (152-218)||(4142121-4142187)
chr3 (152-218)||(4157931-4157997)
chr3 (167-239)||(1891066-1891138)
chr3 (157-217)||(3754599-3754659)
chr3 (155-218)||(1007459-1007522)
chr3 (152-218)||(2678386-2678452)
chr3 (152-222)||(7432041-7432111)
chr3 (160-237)||(803213-803290)
chr3 (151-216)||(13498224-13498289)
chr3 (160-220)||(2696727-2696787)
chr3 (152-218)||(989394-989460)
chr3 (152-214)||(997578-997640)
chr3 (152-214)||(1013968-1014030)
chr3 (167-216)||(2456249-2456298)
chr3 (152-217)||(9608331-9608396)
chr3 (153-216)||(2442039-2442102)
chr3 (167-222)||(2459269-2459324)
chr3 (167-216)||(771501-771550)
chr3 (185-222)||(1897697-1897734)
chr3 (185-222)||(1907143-1907180)
chr3 (151-216)||(12133097-12133162)
chr3 (167-215)||(2631358-2631406)
chr3 (151-218)||(2686298-2686368)
[»] chr8 (1 HSPs)
chr8 (152-239)||(19727858-19727945)
[»] chr5 (7 HSPs)
chr5 (152-218)||(11081811-11081877)
chr5 (156-218)||(23766853-23766915)
chr5 (156-218)||(23816701-23816763)
chr5 (169-237)||(41973474-41973543)
chr5 (158-218)||(23769639-23769699)
chr5 (158-218)||(23819487-23819547)
chr5 (165-216)||(20292995-20293046)
[»] scaffold0200 (1 HSPs)
scaffold0200 (169-237)||(782-851)
[»] scaffold0044 (1 HSPs)
scaffold0044 (167-217)||(89142-89192)
[»] chr4 (2 HSPs)
chr4 (152-213)||(22672114-22672175)
chr4 (154-218)||(20019761-20019825)
[»] chr7 (3 HSPs)
chr7 (152-216)||(1078147-1078211)
chr7 (167-206)||(27755733-27755772)
chr7 (167-217)||(39298976-39299026)
[»] chr2 (1 HSPs)
chr2 (167-216)||(36577366-36577415)
[»] chr6 (1 HSPs)
chr6 (153-213)||(370773-370833)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 968883 - 968648
Alignment:
Q  4 attttccaaccgagtacacgcaaaagtaccatttattgaattgtaaataatccattttcggataccatatttgtctgtacacttcagcaacatttggttt 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  968883 attttctaaccgagtacacgcaaaagtaccatttattgaattgtaaataatccattttcgggtaccatatttgcctgtacacttcagcaacacttggttt 968784  T
Q  104 tcctcaaaaatatttactatatcaataataatgtaagttataggaagataagaaatagtgaataatttagtccatgactctttatttctatgttccttca 203  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  968783 tcctcaaaaatatttactatatcaataataatataagttataggaagataagaaatagtgaataatttagtccatgactctttatttccatgttccttca 968684  T
Q  204 taacccaaacatcatgaccgataatcatgcacaaac 239  Q
    ||||||||||||||||||||||||||||||||||||    
T  968683 taacccaaacatcatgaccgataatcatgcacaaac 968648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 1940567 - 1940652
Alignment:
Q  153 aagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaa 238  Q
    ||||||||||||| ||||||||||| || |||| ||||| |||||||||||||||||||||||||||||| ||||  |||||||||    
T  1940567 aagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgaccaataacaatgcacaaa 1940652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 1931141 - 1931228
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaac 239  Q
    |||||||||||||| ||||||||||| || |||||||||| ||||||| |||||||||||||||||||| | |||| |||||| ||||    
T  1931141 taagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatcatgatcaataaccatgcataaac 1931228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 1936969 - 1937054
Alignment:
Q  154 agaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaac 239  Q
    |||||||||||| ||||||| ||| || ||||||||| ||| ||||||||||||||||||||||| ||| | || |||||||||||    
T  1936969 agaaatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaac 1937054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 1022549 - 1022487
Alignment:
Q  156 aaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    |||||||||| ||||||||||||||||| ||||||| || ||||||||| |||||||||||||    
T  1022549 aaatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcat 1022487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 4142121 - 4142187
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    |||| ||||||||| ||||||||||| ||||||||||||| || ||||||||||| |||||||||||    
T  4142121 taaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 4157931 - 4157997
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    ||||| |||||||| ||||||||||| ||||||||||||| || ||||||||||| |||||||||||    
T  4157931 taagagatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4157997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 1891066 - 1891138
Alignment:
Q  167 aatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaac 239  Q
    ||||||||||| || |||||||||| |||||||||||||| ||||||||||||||| | || || ||||||||    
T  1891066 aatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgaccaaaaaccaggcacaaac 1891138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 3754659 - 3754599
Alignment:
Q  157 aatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatca 217  Q
    |||||| || ||||||||||| ||||||||||||| || ||||||||||||||||||||||    
T  3754659 aatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatca 3754599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 1007522 - 1007459
Alignment:
Q  155 gaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    ||||||||||| ||||||||||| ||||| ||||||| || ||||||||| |||||||||||||    
T  1007522 gaaatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcat 1007459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 2678386 - 2678452
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    |||| ||||||||| |||||||||||||||||||| |||| || ||  |||||||||||||||||||    
T  2678386 taaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcat 2678452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 7432041 - 7432111
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgacc 222  Q
    |||||||| ||||| ||||||||||| || |||||||||| || ||||||||||  |||||||||||||||    
T  7432041 taagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgacc 7432111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 803213 - 803290
Alignment:
Q  160 agtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaa 237  Q
    |||||| || |||||||| ||||||||||||| || ||| ||||||||||||||||||| |||   ||||||||||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaatcatgcacaa 803290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 13498289 - 13498224
Alignment:
Q  151 ataagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatc 216  Q
    |||||| ||| || ||||||||||||| ||||||||||||| || ||||||||||| |||||||||    
T  13498289 ataagagatattgtataatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 2696727 - 2696787
Alignment:
Q  160 agtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatga 220  Q
    |||||| |||||| |||| ||||||||||||| || ||||||||||| |||||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcatga 2696787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 989460 - 989394
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    |||||||||||||| ||||||||||| |||||||||||||  |  || ||||| |||||||||||||    
T  989460 taagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 989394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 997640 - 997578
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaaca 214  Q
    ||||| || ||||||| ||||||||| ||||||||||||| || ||||||||| |||||||||    
T  997640 taagatatggtgaatagtttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 1014030 - 1013968
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaaca 214  Q
    ||||| || ||||||| ||||||||| ||||||||||||| || ||||||||| |||||||||    
T  1014030 taagatatggtgaatagtttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 2456298 - 2456249
Alignment:
Q  167 aatttagtccatgactctttatttctatgttccttcataacccaaacatc 216  Q
    ||||||||||| || |||||||||| || |||||||||||||||||||||    
T  2456298 aatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 9608331 - 9608396
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatca 217  Q
    ||||||| | || ||||||||||||| || ||| |||||| || ||||||||||||||||||||||    
T  9608331 taagaaacactgtataatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 2442102 - 2442039
Alignment:
Q  153 aagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatc 216  Q
    |||||| |||||| ||||||||||| || |||||||||| ||  |||||||||| |||||||||    
T  2442102 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 2459324 - 2459269
Alignment:
Q  167 aatttagtccatgactctttatttctatgttccttcataacccaaacatcatgacc 222  Q
    ||||| ||||| ||||||||||||| || ||||||||||| ||||||| |||||||    
T  2459324 aattttgtccaagactctttatttccatattccttcataatccaaacaacatgacc 2459269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 771501 - 771550
Alignment:
Q  167 aatttagtccatgactctttatttctatgttccttcataacccaaacatc 216  Q
    ||||||||||| || ||| |||||| || |||||||||||||||||||||    
T  771501 aatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 1897697 - 1897734
Alignment:
Q  185 ttatttctatgttccttcataacccaaacatcatgacc 222  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  1897697 ttatttccatgttccttcataatccaaacatcatgacc 1897734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 1907143 - 1907180
Alignment:
Q  185 ttatttctatgttccttcataacccaaacatcatgacc 222  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  1907143 ttatttccatgttccttcataatccaaacatcatgacc 1907180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 12133162 - 12133097
Alignment:
Q  151 ataagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatc 216  Q
    |||||||| | |||| ||||||||||| |||||| |||||| ||  ||| ||||||||||||||||    
T  12133162 ataagaaacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatc 12133097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 2631406 - 2631358
Alignment:
Q  167 aatttagtccatgactctttatttctatgttccttcataacccaaacat 215  Q
    ||||||||||| ||||||| ||||| || ||||||||||| ||||||||    
T  2631406 aatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 2686298 - 2686368
Alignment:
Q  151 ataagaaatagtgaataatttagtccatgactctttatttctatgttccttc---ataacccaaacatcat 218  Q
    ||||| ||||||||| |||||| |||| |||||||| |||| || |||||||   ||||||||||||||||    
T  2686298 ataaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcat 2686368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 19727945 - 19727858
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaac 239  Q
    |||||||||||||| | ||||||||||||||||||||||  || |||  |||||||||||||||||| |||   || |||||||||||    
T  19727945 taagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaaaccatgcacaaac 19727858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 11081877 - 11081811
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    |||| |||||| || ||||||||||| ||||||||||||| ||  ||||||||||||||||||||||    
T  11081877 taaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcat 11081811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 23766853 - 23766915
Alignment:
Q  156 aaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    |||||||||| ||||||||||| ||||||||||||| || ||| ||||||| |||||||||||    
T  23766853 aaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23766915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 23816701 - 23816763
Alignment:
Q  156 aaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    |||||||||| ||||||||||| ||||||||||||| || ||| ||||||| |||||||||||    
T  23816701 aaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23816763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 41973474 - 41973543
Alignment:
Q  169 tttagtccatgactctttatttctatgttccttcataacccaaacatcatga-ccgataatcatgcacaa 237  Q
    ||||||||||||| ||||||||  || ||||||||||||||||||||||||| | || ||||||||||||    
T  41973474 tttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaaatcatgcacaa 41973543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 23769639 - 23769699
Alignment:
Q  158 atagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    |||||||| ||||||||||| ||| ||||||| | || ||||||||||| |||||||||||    
T  23769639 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23769699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 23819487 - 23819547
Alignment:
Q  158 atagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    |||||||| ||||||||||| ||| ||||||| | || ||||||||||| |||||||||||    
T  23819487 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23819547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 20293046 - 20292995
Alignment:
Q  165 ataatttagtccatgactctttatttctatgttccttcataacccaaacatc 216  Q
    ||||||||||||| ||||||||| ||| || ||||||||||| |||||||||    
T  20293046 ataatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 782 - 851
Alignment:
Q  169 tttagtccatgactctttatttctatgttccttcataacccaaacatcatga-ccgataatcatgcacaa 237  Q
    ||||||||||||| ||||||||  || ||||||||||||||||||||||||| | || ||||||||||||    
T  782 tttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaaatcatgcacaa 851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 89192 - 89142
Alignment:
Q  167 aatttagtccatgactctttatttctatgttccttcataacccaaacatca 217  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||| ||||    
T  89192 aatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 22672114 - 22672175
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaac 213  Q
    |||||||||||||| ||||||||||| || || ||||||| || ||||||||| ||||||||    
T  22672114 taagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 20019761 - 20019825
Alignment:
Q  154 agaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 218  Q
    ||||| |||||| ||||||||||| ||||||| | ||| || ||||||||| |||||||||||||    
T  20019761 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 20019825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 1078147 - 1078211
Alignment:
Q  152 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatc 216  Q
    ||||||| | |||| ||||||||||| |||||| |||||| ||  ||||||||||||||||||||    
T  1078147 taagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 27755772 - 27755733
Alignment:
Q  167 aatttagtccatgactctttatttctatgttccttcataa 206  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  27755772 aatttagtctatgactctttatttctatattccttcataa 27755733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 39299026 - 39298976
Alignment:
Q  167 aatttagtccatgactctttatttctatgttccttcataacccaaacatca 217  Q
    ||||||||||| ||||||||||||| |  |||||||| |||||||||||||    
T  39299026 aatttagtccaggactctttatttccacattccttcaaaacccaaacatca 39298976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 36577415 - 36577366
Alignment:
Q  167 aatttagtccatgactctttatttctatgttccttcataacccaaacatc 216  Q
    |||||| |||| ||||||||||||| || ||||||||||| |||||||||    
T  36577415 aatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 370773 - 370833
Alignment:
Q  153 aagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaac 213  Q
    |||||||| |||| ||||||||||| || |||||||||| ||  | |||||||||||||||    
T  370773 aagaaatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University