View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_high_33 (Length: 216)
Name: NF17422_high_33
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 17488647 - 17488796
Alignment:
| Q |
1 |
gtacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtgttgctacatagtctctagcattttctatgatcgaaatttcgtcca |
100 |
Q |
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| T |
17488647 |
gtacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtgttgctacatagtctctagcattttctatgatcgaaatttcgtcca |
17488746 |
T |
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| Q |
101 |
tctacacatttatatagagaaataaatttcacttttcatccctattatta |
150 |
Q |
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| T |
17488747 |
tctacacatttatatagagaaataaatttcacttttcatccctattatta |
17488796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 17564567 - 17564418
Alignment:
| Q |
1 |
gtacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtgttgctacatagtctctagcattttctatgatcgaaatttcgtcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17564567 |
gtacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtgttgctacatagtctctagcattttctatgatcgaaatttcgtcca |
17564468 |
T |
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| Q |
101 |
tctacacatttatatagagaaataaatttcacttttcatccctattatta |
150 |
Q |
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| T |
17564467 |
tctacacatttatatagagaaataaatttcacttttcatccctattatta |
17564418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1916941 - 1917054
Alignment:
| Q |
1 |
gtacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtgttgctacatagtctctagcattttctatgatcgaaatttcgtcca |
100 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||| |
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| T |
1916941 |
gtacaaatgttggatccagcttcttcttctagctctctcacacgttcttgaagtgttgctaaatagtctctagcttgttctatgatcgaaagttcgtcca |
1917040 |
T |
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| Q |
101 |
tctacacatttata |
114 |
Q |
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|||||||||||||| |
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| T |
1917041 |
tctacacatttata |
1917054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 1869801 - 1869873
Alignment:
| Q |
2 |
tacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtgttgctacatagtctctagc |
74 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||| |||| || | |||||||||||||| |
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| T |
1869801 |
tacaaatgtttgatccagcttcttgttctagctctctcacacgttctgcaagtttttccacatagtctctagc |
1869873 |
T |
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