View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_high_36 (Length: 201)
Name: NF17422_high_36
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 17488575 - 17488401
Alignment:
| Q |
12 |
aagcaaaggtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaataatgacctaccttgaaaatcttcatct |
111 |
Q |
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| T |
17488575 |
aagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacctgccttgaaaatcttcatct |
17488476 |
T |
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| Q |
112 |
ttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
186 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17488475 |
ttcagtagttaacagtagtgtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
17488401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 17564639 - 17564813
Alignment:
| Q |
12 |
aagcaaaggtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaataatgacctaccttgaaaatcttcatct |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
17564639 |
aagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacctgccttgaaaatcttcatct |
17564738 |
T |
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| Q |
112 |
ttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
186 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17564739 |
ttcagtagttaacagtagtgtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
17564813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 1916893 - 1916719
Alignment:
| Q |
12 |
aagcaaaggtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaataatgacctaccttgaaaatcttcatct |
111 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
1916893 |
aagcaaaagtgttacaaaaagatgtacttgtcatagtccattgtgagaaacaaaatggtattctgctcaaaatactgacctaccttgaaaatcttcatct |
1916794 |
T |
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| Q |
112 |
ttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1916793 |
ttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
1916719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 1869713 - 1869571
Alignment:
| Q |
27 |
aaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaataatgacctaccttgaaaatcttcatctttcagtagttaacag |
126 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| || ||||||||||||||||||||| || |
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| T |
1869713 |
aaaaagatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccaccttgcaagtcttcatctttcagtagttaatag |
1869614 |
T |
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| Q |
127 |
tagagtcttgaattttggaaaatccatccttgacatcaccatc |
169 |
Q |
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||| |||||| | |||||||||||||||||||||||||||||| |
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| T |
1869613 |
tagtgtcttgcaatttggaaaatccatccttgacatcaccatc |
1869571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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