View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17422_high_4 (Length: 549)
Name: NF17422_high_4
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 42275827 - 42275315
Alignment:
| Q |
18 |
aatagattgtcacagatcttcttcaaacttcaaagccattggaacaacctgcacgtaatgtagtatcatattttgatgctttccatattctcttctcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275827 |
aatagattgtcacagatcttcttcaaacttcaaagccattgcaacaacctgcacgtaatgtagtatcatattttgatgctttccatattctcttctcttc |
42275728 |
T |
|
| Q |
118 |
ctaccgcaacttcatttaaagaaacctactcttagctcaaaaattgcaccaatttgtacaagtctaagccaaaacaacttgatggcaaaatgcacaaagt |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275727 |
ctaccgcaactccatttaaagaaacctactcttagctcaaaaattgcaccaatt-gtacaagtctaagccaaaacaacttgatggcaaaatgcacaaagt |
42275629 |
T |
|
| Q |
218 |
ctctagttatgttcccaatcctcttgcaaactatatgcttccttttgttcccacaacctctaatgtctcaagaaaacaattttgttcgtcaaccagctag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275628 |
ctctagttatgttcccaatcctcttgcaaactatatgcttccttttgttcccacaacctctaatgtctcaagaaaacaattttgttcgtcaaccagctag |
42275529 |
T |
|
| Q |
318 |
tcagctcatcatcactccccatcaacgctccaattcagaacctcaacaggttcattataaattttagttaccttaactcattgataaattcatatatttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275528 |
tcagctcatcatcactccccatcaacgctccaattcagaacctcaacaggttcattataaattttagttaccttaactcattgataaattcatatatttt |
42275429 |
T |
|
| Q |
418 |
gtcacactaaataaaccaaccagtcacaaactcatttagtgaaaaatttcaaaacaaatttgactataatcatacattaaattggtcattttaagattag |
517 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275428 |
gtcacactaaataa----accagtcacaaactcatttagtgaaaaaattcaaaacaaatttgactataatcatacattaaattggtcattttaagattag |
42275333 |
T |
|
| Q |
518 |
tgacgttgtttgtgacat |
535 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
42275332 |
tgacgttgtttgtgacat |
42275315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University