View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17422_high_6 (Length: 464)

Name: NF17422_high_6
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17422_high_6
NF17422_high_6
[»] chr2 (8 HSPs)
chr2 (10-446)||(7156181-7156628)
chr2 (140-198)||(7174503-7174561)
chr2 (19-68)||(7160752-7160801)
chr2 (19-63)||(6538843-6538887)
chr2 (10-68)||(7199967-7200025)
chr2 (154-199)||(7160901-7160946)
chr2 (19-68)||(7168688-7168737)
chr2 (10-66)||(7174362-7174418)
[»] chr6 (2 HSPs)
chr6 (139-200)||(9825635-9825696)
chr6 (139-200)||(9819955-9820016)
[»] chr3 (3 HSPs)
chr3 (19-68)||(2442043-2442092)
chr3 (19-68)||(4142132-4142181)
chr3 (19-68)||(4157942-4157991)
[»] chr5 (1 HSPs)
chr5 (20-68)||(11081817-11081865)


Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Original strand, 7156181 - 7156628
Alignment:
Q  10 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagcca-----------aagtatcaccatgacaaagtatgcacaaacaa 98  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  7156181 aggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatctgccaaagtatcaccatgacaaagtatgcacaaacaa 7156280  T
Q  99 tccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7156281 tccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 7156380  T
Q  199 tgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7156381 tgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttcctgttccggtattaggaaaacgataagggaaatg 7156480  T
Q  299 ggtttgaatccttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctattaccattaataagagattcataccaagaaacc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7156481 ggtttgaatccttctccaataatcggtacccatggtgtgaacatttacttgagttttcatagccctattaccattaataagagattcataccaagaaact 7156580  T
Q  399 gcgaccaccttgtaagtatcactggaatgatcatatccaaagccatac 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7156581 gcgaccaccttgtaagtatcactggaatgatcatatccaaagccatac 7156628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 7174503 - 7174561
Alignment:
Q  140 tccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 198  Q
    |||||||||||||||||||||||||| | |||||||  ||||||||| || ||||||||    
T  7174503 tccataatcaggctgcaatatctctccataagactcattctccaaatgaagagaaacaa 7174561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  19 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 68  Q
    ||||||||||| ||||||||| | ||||| ||||||||||||||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 6538887 - 6538843
Alignment:
Q  19 gaacaatttagcccaagaatcttcatttcgatactccttcataag 63  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||    
T  6538887 gaacaatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 7199967 - 7200025
Alignment:
Q  10 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 68  Q
    |||| ||| ||||||| |||||||||||| |||||||| | |||||||||||| |||||    
T  7199967 aggaacacggaacaatctagcccaagaattttcatttccaaactccttcataacccaaa 7200025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 7160901 - 7160946
Alignment:
Q  154 gcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaat 199  Q
    |||||| ||||||| |||||||| |||||||||||| |||||||||    
T  7160901 gcaatagctctcgataagactccttctccaaatcaagagaaacaat 7160946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  19 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 68  Q
    ||||||||||| ||||||||| | ||||| ||| ||||||||||||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 7174362 - 7174418
Alignment:
Q  10 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagcca 66  Q
    |||| ||| ||||||| ||| ||||||||||| ||||| ||| ||||||||||||||    
T  7174362 aggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagcca 7174418  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 9825635 - 9825696
Alignment:
Q  139 ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg 200  Q
    ||||||||||||||||||| |||||| || | ||||| ||| ||||||||| ||||||||||    
T  9825635 ctccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatg 9825696  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 9819955 - 9820016
Alignment:
Q  139 ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg 200  Q
    ||||||||||||||||||| |||||| || | |||||  || ||||||||| ||||||||||    
T  9819955 ctccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatg 9820016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 2442092 - 2442043
Alignment:
Q  19 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 68  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  2442092 gaacaatttagtccaagaatctttatttccatactccttcataatccaaa 2442043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4142132 - 4142181
Alignment:
Q  19 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 68  Q
    ||||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  4142132 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4157942 - 4157991
Alignment:
Q  19 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 68  Q
    ||||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  4157942 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  20 aacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 68  Q
    |||||||||| |||||| |||| ||||| |||||||||||||| |||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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