View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_1 (Length: 827)
Name: NF17422_low_1
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 776; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 19 - 814
Target Start/End: Complemental strand, 28472283 - 28471488
Alignment:
| Q |
19 |
ctatgatcatgactgcatcttcaaattcgaagaagattcaaacctcactttaacaccaggttcttatttgttccagagtagagtcttaagcagtttttgg |
118 |
Q |
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| T |
28472283 |
ctatgatcatgactgcatcatcgaattcgaagaagattcaaacctcactttaacaccaggttcttatttgttccagagtagagtcttaaacagtttttgg |
28472184 |
T |
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| Q |
119 |
ggttcctttgattcattgagttgcaaaaaagaaatcaacttggtttcaagtattgtcaaagaactaaaaggtgaacggttattgaatttcgaagcagaaa |
218 |
Q |
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| T |
28472183 |
ggttcctttgattcattgagttgcaaaaaagaaatcaacttggtttcaagtattgtcaaagaactaaaaggtgaacggttattgaatttcgaagcagaaa |
28472084 |
T |
|
| Q |
219 |
ctctttgtattggtgaaacttcaaacatagctgtttccacactgaagaaacttggtttctctaatgtgattaaccatcgtgttttctcattcaacaagaa |
318 |
Q |
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| T |
28472083 |
ctctttgtattggtgaaacttcaaacatagctgtttccacactgaagaaacttggtttcactaatgtgattaaccatcgtgttttctcattcaacaagaa |
28471984 |
T |
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| Q |
319 |
gaattttgtttactcgcttgatcatcaccacgatgaatcgttcgactttgttttgtccaaggatttgggaaaagttgctgtccctgcattggttgtcctt |
418 |
Q |
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| T |
28471983 |
gaattttgtttactcgcttgatcatcaccacgatgaatcgttcgactttgttttgtccaaggatttgggaaaagttgctgtccctgcattggttgtcctt |
28471884 |
T |
|
| Q |
419 |
gaagttgaacgtattctgaaacctaatggaattggtgctttgcttttggattttgatgacaacgacaacattaacatgataagatatgcttcaccgattt |
518 |
Q |
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| T |
28471883 |
gaagttgaacgtattctgaaacctaatggaattggtgctttgcttttggatttcgatgacaacgacaacattaacatgataagatatgcttcaccgattt |
28471784 |
T |
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| Q |
519 |
cagcgttgctgcgaaattcatctattgttcatgttagtcttgtcaataatcatggcctcgttgttttcaagaaaaaatcagaatcaaaatctgaaactga |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28471783 |
cagcgttgctgcgaaattcatctattgttcatgttagtcttgtcaataatcatggcctcgttgttttcaagaaaaaatcagaatcaaaatctgaaactga |
28471684 |
T |
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| Q |
619 |
aagtgaaaacagaagctctttgttctatcatcaagttcttccagaagattgtaaaagtgttaactttgctaagcaattcatgaatctaatagagccgccg |
718 |
Q |
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| T |
28471683 |
aagtgaaaacagaagctctttgttctatcatcaagttcttccagaagattgtaaaagtgttaactttgctaagcaattcatgaatctaatagagccgccg |
28471584 |
T |
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| Q |
719 |
ctagcgaaggaaacaccataccaggaaaaaaccacttatttgcctaagtttaaggatgtttcttcaagtaagaagaatttagtttatgttaatatt |
814 |
Q |
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| T |
28471583 |
ctagcgaaggaaacaccataccaggaaaaaaccacttatttgcctaagtttaaggatgtttcttcaagtaagaagaatttagtttatgttaatatt |
28471488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 396 - 456
Target Start/End: Original strand, 40806240 - 40806300
Alignment:
| Q |
396 |
ctgtccctgcattggttgtccttgaagttgaacgtattctgaaacctaatggaattggtgc |
456 |
Q |
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| T |
40806240 |
ctgtccctgctttgcttgttcttgaggttgaacgtgttcttaagcctaatggaattggtgc |
40806300 |
T |
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