View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_10 (Length: 451)
Name: NF17422_low_10
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 40954737 - 40954327
Alignment:
| Q |
11 |
ttattctcatgttacccatatcccgtcccaaacattatttaggacaagagtattatattattttttactcatattttcttatgagtcaannnnnnnatcc |
110 |
Q |
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| T |
40954737 |
ttattctcatgttaccaacatcccgtcccaaacattatttaggacaagagtattatattattttttactcatattttcttatgagtcaatttttttattt |
40954638 |
T |
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| Q |
111 |
ggcnnnnnnnnnn--tctaacacttagccaatgattcccaaactttcacgaatttgttgaagtttgaaagtaaaattttgagattattgttatttctatt |
208 |
Q |
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| T |
40954637 |
ggcaaaaaaaaataatctaacacttagccaatgattcccaaactttcacgaatttgttgaagtttgaaagtaaaattttgagattattgttatttctatt |
40954538 |
T |
|
| Q |
209 |
gtatttatcctcagttgctcatcccgtcctaaatattatttaggacaagagtgttatatcatttttgactcatattttcttacaagtcaaatttttaatc |
308 |
Q |
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| T |
40954537 |
gtatttatcctcagttactcatcccgtcctaaatattatttaggacaagagtgttatatcatttttgactcatattttcttacaagtcaaatttttaatc |
40954438 |
T |
|
| Q |
309 |
tggcaaaataaaaagtttaacacttagccaatgattctcaaactttcaagaatttgttgaagtttgaatttaaattctgagattattgttgttcctattg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
40954437 |
tggcaaaataaaaagtttaacacttagccaatgattctcaaactttcaagaatttgttgaagtttgaacttaaattttgagattattgttgttcctattg |
40954338 |
T |
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| Q |
409 |
tatttatatat |
419 |
Q |
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| T |
40954337 |
tatttatatat |
40954327 |
T |
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