View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_11 (Length: 451)
Name: NF17422_low_11
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 2461416 - 2461837
Alignment:
| Q |
14 |
agattagacggttcactaggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2461416 |
agattagacggttcactaggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcttcatgctcagttggaatttttgttgatc |
2461515 |
T |
|
| Q |
114 |
gtgggctcggtggttcatgtcatgtgtctgcaagtaatgtttcctattgcattgccgtgcttttctttggcggtggtgatgaccatgaagctcttgctta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461516 |
gtgggctcggtggttcatgtcatgtgtctgcaagtaatgtttcctattgcattgctgtgcttttctttggcggtggtgatgaccatgaagctcttgctta |
2461615 |
T |
|
| Q |
214 |
tggagcccgtatggccgaacaccctggcatacgattagtggttattcgcttcttagtggaacctaatattgttggacagattaccaaatttgacgttgga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461616 |
tggagcccgtatggccgaacaccctggcatacgattagtggttattcgcttcttagtggaacctaatattgttggacagattaccaaatttgacgttgga |
2461715 |
T |
|
| Q |
314 |
gactcttctagcagtaattcaatatcagaagatgatgagttccttgcagaatttaagctgaaaacagctagttatgactctgttttctatgaagaagaaa |
413 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2461716 |
gactcttctaggagtaattcaatatcagaagatgatgagttccttgcagaatttaagctgaaaacagctagttatgactctgttatctatgaagaagaaa |
2461815 |
T |
|
| Q |
414 |
tagtaaaagatgctgcagaaac |
435 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2461816 |
tagtaaaagatgctgcagaaac |
2461837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 2450404 - 2450827
Alignment:
| Q |
18 |
tagacggttcactaggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatcgtgg |
117 |
Q |
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||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2450404 |
tagacggttcactagacattataagaaacgattttcgtttggttaacaaaagggtactagagcatgcaccgtgctcagttggaatttttgttgatcgtgg |
2450503 |
T |
|
| Q |
118 |
gctcggtggttcatgtcatgtgtctgcaagtaatgtttcctattgcattgccgtgcttttctttggcggtggtgatgaccatgaagctcttgcttatgga |
217 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
2450504 |
gcttggtggttcatgtcatgtgtctgcaagtaacgtttcctattgcattgctgtgcttttctttggtggtggtgatgaccgtgaagctcttgcttatgga |
2450603 |
T |
|
| Q |
218 |
gcccgtatggccgaacaccctggcatacgattagtggttattcgcttcttagtggaacctaatattgttggacagattaccaaatttgacgttggagact |
317 |
Q |
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|| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || |||| |||||| ||||||||||||||| |
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| T |
2450604 |
gctcgtatggccgaacaccctggcatacaattagtggttattcacttcttagtggaacctaatattgcagggaagatcaccaaagttgacgttggagact |
2450703 |
T |
|
| Q |
318 |
cttctagcagtaattcaatatca------gaagatgatgagttccttgcagaatttaagctgaaaacagctagttatgactctgttttctatgaagaaga |
411 |
Q |
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||||||||| ||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||| | | ||||||| || ||||||||||| |
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| T |
2450704 |
cttctagcaataattcaatatcagattctgaagatggcgagtttcttgctgaatttaagctgaaaacagccaatgatgactcaattatctatgaagaaag |
2450803 |
T |
|
| Q |
412 |
aatagtaaaagatgctgcagaaac |
435 |
Q |
| |
|
|||||| |||||||||| |||||| |
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| T |
2450804 |
aatagttaaagatgctgaagaaac |
2450827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 435
Target Start/End: Original strand, 2445639 - 2446060
Alignment:
| Q |
14 |
agattagacggttcactaggcattataagaaatgattttcgactggttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatc |
113 |
Q |
| |
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|||||||| |||||||||| | ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2445639 |
agattagatggttcactagacgttacaagaaatgattttcgatttgttaacaaaagggtactcgagcatgcaccatgctcagttggaatttttgttgatc |
2445738 |
T |
|
| Q |
114 |
gtgggctcggtggttcatgtcatgtgtctgcaagtaatgtttcctattgcattgccgtgcttttctttggcggtggtgatgaccatgaagctcttgctta |
213 |
Q |
| |
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| || || |||||| |||||||||||||||||||||||||||| ||||| | || |||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
2445739 |
gcggacttggtggtacatgtcatgtgtctgcaagtaatgtttcttattgtgtggctgtgcttttctttggtggtggtgatgaccgtgaagctcttgctta |
2445838 |
T |
|
| Q |
214 |
tggagcccgtatggccgaacaccctggcatacgattagtggttattcgcttcttagtggaacctaatattgttggacagattaccaaatttgacgttgga |
313 |
Q |
| |
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||||| |||| |||||| |||||||||||| |||||||| |||||||||||||||||||| ||| |||| | || |||||| || ||||||||||| |
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| T |
2445839 |
cggagctcgtacggccgagcaccctggcataagattagtgattattcgcttcttagtggaatctactattttaggggagattagcagcgttgacgttgga |
2445938 |
T |
|
| Q |
314 |
gactcttctagcagtaattcaatatcagaagatgatgagttccttgcagaatttaagctgaaaacagctagttatgactctgttttctatgaagaagaaa |
413 |
Q |
| |
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||||| || | | |||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||||| ||| ||||||| ||| |||| ||||| ||| |
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| T |
2445939 |
gactcatcaatcggtaaatcaatctcagaggatgaggagttccttgcggaatttaagctgaaaacagccagtgatgactccgttatctacgaagagaaaa |
2446038 |
T |
|
| Q |
414 |
tagtaaaagatgctgcagaaac |
435 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
2446039 |
tagtaaaagatgctgccgaaac |
2446060 |
T |
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