View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_12 (Length: 439)
Name: NF17422_low_12
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 65 - 424
Target Start/End: Complemental strand, 41208515 - 41208156
Alignment:
| Q |
65 |
ataccatttatcttctttgagaattcatcccaccaatctacaacaccctctttctcagatgacccagaagcagaaccagaaccgttattattgtcatgtg |
164 |
Q |
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| T |
41208515 |
ataccgttgatcttctttgacaattcatcccaccaatctacaagaccctctttctcagatgacccagaagcagaaccagaaccgttattattgtcatgtg |
41208416 |
T |
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| Q |
165 |
tcttctctgtctttcttttcttcttggttcctctcacaggacccatcacaacaaattaattgaatcaagaattttgaaggggcaacaaagtctacaagaa |
264 |
Q |
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| T |
41208415 |
tcttctctgtctttcttctcttcttggttcctctcacaggacccatcacaacaagttaattgaatcaagaattttgaaggggcaacaaagtctacaagaa |
41208316 |
T |
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| Q |
265 |
agaattcaaagggtcaaagacaaaagaaaaccaaaacacgattcatcactatcataaattcnnnnnnnnnnnnnnnnnnnngagtaataagacaacactt |
364 |
Q |
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| T |
41208315 |
agaattcaaagggtcaaatacaaaagaaaaccaaaacacgattcatcactatcataaattcataatatatatacatatatagagtaataagacaacactt |
41208216 |
T |
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| Q |
365 |
ataagtc-aacaacacaaaccttagagaatgatggaccgttacatatatgtttgatgttat |
424 |
Q |
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| T |
41208215 |
ataagtcaaacaacacaaacc-tagagaatgatggaccgttacatatatgtttgatgttat |
41208156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 29 - 325
Target Start/End: Complemental strand, 41198568 - 41198276
Alignment:
| Q |
29 |
caattatataaattgaatacagtgatgatgaaattcataccatttatcttctttgagaattcatcccaccaatctacaacaccctctttctcagatgacc |
128 |
Q |
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| T |
41198568 |
caattatataaattgaatacagtgatgatgaaattcataccatttatcttctttgagaattcatcccaccaatctacaacaccctctttctcagatgacc |
41198469 |
T |
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| Q |
129 |
cagaagcagaaccagaaccgttattattgtcatgtgtcttctctgtctttcttttcttcttggttcctctcacaggacccatcacaacaaattaattgaa |
228 |
Q |
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| T |
41198468 |
cagaagcagaatca------ttattattgtcataactcttctctgtctttcttctctttttgattcctctcacaggacccatcacaacaagttaattgaa |
41198375 |
T |
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| Q |
229 |
tcaagaattttgaaggggcaa--caaagtctacaagaaagaattcaaagggtcaaagacaaaagaaaaccaaaacacgattcatcactatcataaattc |
325 |
Q |
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| T |
41198374 |
tcagaaattttgaagggtcaaatcaaagtctgcaagaaagaattcaaagggtcaaagacaaaagaaaaccaaaacaagattcatcactatcataaattc |
41198276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 424
Target Start/End: Complemental strand, 41198249 - 41198170
Alignment:
| Q |
346 |
gagtaataagacaacacttataagtcaacaacacaaaccttagagaatgatggaccgtt-acatatatgtttgatgttat |
424 |
Q |
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| T |
41198249 |
gagtaataacacaatacttataaatcaacaacacaaaccttagagaatgatggacagttaacatatatttttgatgttat |
41198170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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