View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_14 (Length: 434)
Name: NF17422_low_14
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 101 - 427
Target Start/End: Complemental strand, 45687144 - 45686817
Alignment:
| Q |
101 |
gcataattggaattgaagtgaaaattgagtggtaaagtgttcatttgctgcttttgcaagcaaagaaagaattagaagactctgtttctaatccttatct |
200 |
Q |
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| T |
45687144 |
gcatgattggaattgaagtgaaaattgagtggtaaagtgttcatttgctgcttttgcaagcaaagaaagaattagaagactctgtttctaatccttatct |
45687045 |
T |
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| Q |
201 |
taattattaatgatgatagagtaccccgttaattactctcctttgtactcnnnnnnnctgattgtttatgatttgcatcttctttttgttactaataaag |
300 |
Q |
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| T |
45687044 |
taattattaatgatgatagagtaccccgctaattactctcctttgtactctttttttctgattgtttatgatttgcatcttctttttgttactaataaag |
45686945 |
T |
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| Q |
301 |
ggtaatagaaaaaatagattaatgaggtgttgacnnnnnnnnnatatggaaaggaattgttgttcaactatctagaat-gcttggctctatggttttatt |
399 |
Q |
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| T |
45686944 |
ggtaatagaaaaagtagattaatgaggtgttgactttttttttatatggaaaggaattgttgttcaactatctagaatggcttggctctatggttttatt |
45686845 |
T |
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| Q |
400 |
aatttctaattttgaagctgtatctgtg |
427 |
Q |
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| T |
45686844 |
aatttctaattttgaagctgtatctgtg |
45686817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 45687220 - 45687190
Alignment:
| Q |
25 |
caatgaattcggaatctgcgccgttgaaggt |
55 |
Q |
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| T |
45687220 |
caatgaattcggaatctgcgccgttgaaggt |
45687190 |
T |
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