View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17422_low_17 (Length: 392)
Name: NF17422_low_17
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_17 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 13838317 - 13837959
Alignment:
| Q |
18 |
cttctctatacttttcctttttgcaatcttaattattccttctcaattataacattgtataaagctattgatttcataggctatgatgaatcatagagat |
117 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
13838317 |
cttctctatgctttttctttttgcaatcttaattattccttctcaattataacatagtataaagctattaatttcataggctatgatgaatcatagagat |
13838218 |
T |
|
| Q |
118 |
agtcatgcaccactctgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttttgaatcaa |
217 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
13838217 |
agtcatgcaccactttgatttcctgtgctgataactttcttatacccattatttttcagagccttttattccttcaattatcatagttcttttgactcaa |
13838118 |
T |
|
| Q |
218 |
cgccacacccttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13838117 |
cgccacacccttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaat |
13838018 |
T |
|
| Q |
318 |
ttatttgtttcaataaatctaatagaatttacaatctttaatttgtgtttggaggtggat |
377 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13838017 |
ttatttgtttcaatgaatct-atagaatttacaatctttaatttgtgtttggatgtggat |
13837959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 6927230 - 6927173
Alignment:
| Q |
311 |
ttccaatttatttgtttcaataaatctaatagaatttacaatctttaatttgtgtttg |
368 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||||||||||||||||| |||| |
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|
| T |
6927230 |
ttccaatttatttgtttcaatgaatcaaatcgaatttacaatctttaatttgtttttg |
6927173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 7975093 - 7975451
Alignment:
| Q |
18 |
cttctctatacttttcctttttgcaatcttaattattccttctcaattataacattgtataaagctattgatttcataggctatgatgaatcatagagat |
117 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7975093 |
cttctctatgctttttctttttgcgatcttaattattccttcttaattataacatagtataaagctattaatttcataggctatgatgaatcatagagat |
7975192 |
T |
|
| Q |
118 |
agtcatgcaccactctgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttttgaatcaa |
217 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
7975193 |
agtcatgcaccactttgatttcctgtgctgataactttcttatacccattatttttcagagccttttattccttcaattatgatagttcttttgactcaa |
7975292 |
T |
|
| Q |
218 |
cgccacacccttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7975293 |
cgccacacccttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaat |
7975392 |
T |
|
| Q |
318 |
ttatttgtttcaataaatctaatagaatttacaatctttaatttgtgtttggaggtggat |
377 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7975393 |
ttatttgtttcaataaatct-atagaatttacaatctttaatttgtgtttggatgtggat |
7975451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 1293970 - 1293612
Alignment:
| Q |
18 |
cttctctatacttttcctttttgcaatcttaattattccttctcaattataacattgtataaagctattgatttcataggctatgatgaatcatagagat |
117 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1293970 |
cttctctatgctttttctttttgcaatcttaattattccttctcaattataacatagtataaagctattaatttcataggctatgatgaatcatagagat |
1293871 |
T |
|
| Q |
118 |
agtcatgcaccactctgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttttgaatcaa |
217 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
1293870 |
agtcatgcaccactttgatttcctgtgctgataactttcttatacccattatttttcagagtcttttattccttcaattatcatagttcttttgactcaa |
1293771 |
T |
|
| Q |
218 |
cgccacacccttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1293770 |
cgccacacccttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacaattttcttcaattcattttccaat |
1293671 |
T |
|
| Q |
318 |
ttatttgtttcaataaatctaatagaatttacaatctttaatttgtgtttggaggtggat |
377 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1293670 |
ttatttgtttcaatgaatct-atagaatttacaatctttaatttgtgtttggatgtggat |
1293612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 26543882 - 26543516
Alignment:
| Q |
18 |
cttctctatacttttcctttttgcaatcttaattattccttctcaattataacatt--------gtataaagctattgatttcataggctatgatgaatc |
109 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26543882 |
cttctctatgctttttctttttgcaatcttaattattcattctcaattataacataataacatagtataaagctattaatttcataggctatgatgaatc |
26543783 |
T |
|
| Q |
110 |
atagagatagtcatgcaccactctgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttt |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
26543782 |
atagagatagtcatgcaccactttgatttcctgtgctgataactttcttatacccattatttttcagagccttttattccttcaattatcatagttcttt |
26543683 |
T |
|
| Q |
210 |
tgaatcaacgccacacccttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcat |
309 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26543682 |
tgactcaacgccacacccttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcat |
26543583 |
T |
|
| Q |
310 |
tttccaatttatttgtttcaataaatctaatagaatttacaatctttaatttgtgtttggaggtggat |
377 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26543582 |
tttccaatttatttgtttcaatgaatct-atagaatttacaatctttaatttgtgtttggatgtggat |
26543516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 43313276 - 43312929
Alignment:
| Q |
18 |
cttctctatacttttcctttttgcaatcttaattattccttctcaattataacattgtataaagctattgatttcataggctatgatgaatcatagagat |
117 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43313276 |
cttctctatgctttttctttttgcaatcttaattattcattctcaattataacatagtataaagctattaatttcataggctatgatgaatcatagagat |
43313177 |
T |
|
| Q |
118 |
agtcatgcaccactctgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttttgaatcaa |
217 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
43313176 |
agtcatgcaccactttaatttcctgtgctgataactttcttatacccattatttttcagagtcttttattccttcaattatcatagttcttttgactcaa |
43313077 |
T |
|
| Q |
218 |
cgccacacccttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43313076 |
cgccacacccttttatttccttcatttttctgatggttcttccatcagcaattaacttgtgtcaattttttgaacagttttcttcaattcattttccaat |
43312977 |
T |
|
| Q |
318 |
ttatttgtttcaataaatctaatagaatttacaatctttaatttgtgtt |
366 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
43312976 |
ttatttgtttcaatgaatct-atagaatttacaatcttcaatttctgtt |
43312929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 9901113 - 9901027
Alignment:
| Q |
96 |
ggctatgatgaatcatagagatagtcatgcaccactctgatttcatgtgctgataactttctcatacccattatttttctgagcctt |
182 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9901113 |
ggctatgatgaattttagagatagtcatgcaccactctgatttcctgtgctgataattttctcatacccattatttttctgagcctt |
9901027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 16422561 - 16422476
Alignment:
| Q |
289 |
gaacagttttcttcaattcattttccaatttatttgtttcaataaatctaatagaatttacaatctttaatttgtgtttggaggtg |
374 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16422561 |
gaacagttttcttccattcatttttcaatttatttgtttcaatgaatctaatagaatttacaatctttaatttgtttttggaggtg |
16422476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 30803315 - 30803279
Alignment:
| Q |
99 |
tatgatgaatcatagagatagtcatgcaccactctga |
135 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
30803315 |
tatgatgaatcatagatatagtcatgaaccactctga |
30803279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 8264044 - 8264129
Alignment:
| Q |
96 |
ggctatgatgaatcatagagatagtcatgcaccactctgat-ttcatgtgctgataactttctcatacccattatttttctgagcc |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8264044 |
ggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagcc |
8264129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 8277462 - 8277547
Alignment:
| Q |
96 |
ggctatgatgaatcatagagatagtcatgcaccactctgat-ttcatgtgctgataactttctcatacccattatttttctgagcc |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8277462 |
ggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagcc |
8277547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 33032851 - 33032936
Alignment:
| Q |
96 |
ggctatgatgaatcatagagatagtcatgcaccactctgat-ttcatgtgctgataactttctcatacccattatttttctgagcc |
180 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33032851 |
ggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctcatacccattatttttctgagcc |
33032936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 33051093 - 33051178
Alignment:
| Q |
96 |
ggctatgatgaatcatagagatagtcatgcaccactctga--tttcatgtgctgataactttctcatacccattatttttctgagcc |
180 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
33051093 |
ggctgtgatgagtcatagagatagtcatgcaccactctcatgtttca-atgctgataattttctcatacccaatatttttctgagcc |
33051178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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