View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17422_low_18 (Length: 355)

Name: NF17422_low_18
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17422_low_18
NF17422_low_18
[»] chr4 (4 HSPs)
chr4 (16-328)||(35074377-35074684)
chr4 (235-334)||(33451294-33451393)
chr4 (247-340)||(42964503-42964596)
chr4 (220-305)||(2183295-2183380)
[»] chr1 (8 HSPs)
chr1 (240-342)||(30209709-30209811)
chr1 (16-76)||(30209812-30209872)
chr1 (270-334)||(4593713-4593777)
chr1 (235-340)||(12855280-12855385)
chr1 (266-342)||(42472069-42472145)
chr1 (189-342)||(26793720-26793873)
chr1 (266-321)||(49287981-49288036)
chr1 (270-340)||(49236132-49236202)
[»] chr2 (4 HSPs)
chr2 (193-342)||(36241450-36241598)
chr2 (198-340)||(6452428-6452570)
chr2 (202-340)||(40054475-40054613)
chr2 (270-340)||(6457563-6457633)
[»] scaffold1298 (1 HSPs)
scaffold1298 (182-276)||(1953-2047)
[»] chr7 (4 HSPs)
chr7 (242-334)||(30793465-30793557)
chr7 (197-336)||(39594604-39594743)
chr7 (200-342)||(39644867-39645009)
chr7 (252-312)||(7667431-7667491)
[»] chr3 (6 HSPs)
chr3 (237-340)||(39795286-39795389)
chr3 (239-342)||(45818651-45818754)
chr3 (270-342)||(40416911-40416983)
chr3 (270-333)||(831794-831857)
chr3 (282-340)||(32490868-32490926)
chr3 (189-334)||(7038575-7038720)
[»] chr8 (3 HSPs)
chr8 (281-340)||(26543896-26543955)
chr8 (265-333)||(3346410-3346478)
chr8 (282-340)||(11811662-11811720)
[»] chr5 (5 HSPs)
chr5 (202-336)||(34731238-34731372)
chr5 (182-245)||(7010641-7010704)
chr5 (235-342)||(32529421-32529530)
chr5 (266-340)||(16290794-16290868)
chr5 (264-333)||(7010706-7010775)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 35074684 - 35074377
Alignment:
Q  16 atttccacctttccatcacatacaatgaacatatatcaatattatgcataatatcgaaaggggcagaacataaacatcaattacgatgagctaaaaagaa 115  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||  |||||| ||||  |||||| |||||||||||||||||||||||||||||||    
T  35074684 atttccacctttcgatcacatacgatgaacatatatcaatattatgcccaatatccaaagatgcagaagataaacatcaattacgatgagctaaaaagaa 35074585  T
Q  116 ggggaaaatgagacattnnnnnnnnnnnngaattggagttacatgattcgaaaggtgtccagaagtgtgtttttgctatcctgtttctaacccaactaaa 215  Q
    |||||||||||||||||            |||| ||||||||  || ||||||||||| ||   |||||||||||||||| ||||||||||| |||||||    
T  35074584 ggggaaaatgagacattaaaaaataaaaagaatgggagttacgggactcgaaaggtgtacacgcgtgtgtttttgctatcttgtttctaacctaactaaa 35074485  T
Q  216 acataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagtagaat 315  Q
    ||||||||| |||||| |||||||||     |||||||||   |||| ||||||||||||||||| ||||||||||  |||||| |||||||||||| ||    
T  35074484 acataggataaaaatattgaaggatg-----gataggatagacaatgggattattttatcattttttattggtgcacaaaacaaagaatttaagtaggat 35074390  T
Q  316 atgataattttat 328  Q
    |||||||||||||    
T  35074389 atgataattttat 35074377  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 33451393 - 33451294
Alignment:
Q  235 aaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatc 334  Q
    ||||||||||| ||||| |  ||||||  | |||||||||||| |  |||||||||| |||||||||||||||||||| ||| |||| ||||||||||||    
T  33451393 aaggatgaataggatagaagtagtaataggtttattttatcatatcatattggtgcaccaaacaacgaatttaagtaggatacgatagttttatcatatc 33451294  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 340
Target Start/End: Original strand, 42964503 - 42964596
Alignment:
Q  247 gataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtct 340  Q
    |||||||||||||||| | |||  ||||| ||| ||||||||||| |||| | || |||| || || ||| |||| ||||||||||||||||||    
T  42964503 gataggataagtaatgggtttaaattatcctttcctattggtgcaacaaataccggatttcagcaggataggatagttttatcatatcctgtct 42964596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 2183380 - 2183295
Alignment:
Q  220 aggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatt 305  Q
    ||||| |||||||  |||| || ||| ||||||||  | |||||| ||| |||||| ||||||||||||||| |||||||| ||||    
T  2183380 aggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatccttttctattggtgcaccaaacaacaaatt 2183295  T

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Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 240 - 342
Target Start/End: Complemental strand, 30209811 - 30209709
Alignment:
Q  240 tgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtc 339  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||| ||||||||||||||||||| |||| |    
T  30209811 tgaataggataggataagtaatgagattattttatcattttctattggtgtaccaaacaacagatttaagtaggatatgataattttatcataccctgac 30209712  T
Q  340 ttc 342  Q
    |||    
T  30209711 ttc 30209709  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 30209872 - 30209812
Alignment:
Q  16 atttccacctttccatcacatacaatgaacatatatcaatattatgcataatatcgaaagg 76  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30209872 atttccacctttccatcacatacaaggaacatatatcaatattatgcataatatcgaaagg 30209812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 4593777 - 4593713
Alignment:
Q  270 tttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatc 334  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||| | ||||||||||    
T  4593777 tttatcattttctattggtgcatcaaacaagagatttaagtagaatatgatagtgttatcatatc 4593713  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 12855280 - 12855385
Alignment:
Q  235 aaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatc 334  Q
    ||||||||||| |||| ||||||||||  | ||  | |||| ||| ||||||||||||||||||| | |||||| ||| ||||||||||  |||||||||    
T  12855280 aaggatgaataggatatgataagtaataggtttggtgtatcctttcctattggtgcatcaaacaatggatttaaataggatatgataatgatatcatatc 12855379  T
Q  335 ctgtct 340  Q
    ||||||    
T  12855380 ctgtct 12855385  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 42472069 - 42472145
Alignment:
Q  266 ttattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtcttc 342  Q
    |||||||||||||| ||| || |||| ||||||||| |||||||||| |||||| | | ||||||||| ||||||||    
T  42472069 ttattttatcatttcctactgatgcaccaaacaacggatttaagtaggatatgacagtgttatcatattctgtcttc 42472145  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 342
Target Start/End: Complemental strand, 26793873 - 26793720
Alignment:
Q  189 tgctatcctgtttctaacccaactaaaacataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggt 288  Q
    |||||||  ||| |||||||| | |||||  || || |||||||  |||| ||| || |||||||| || ||| || |||  ||||| ||||||||||||    
T  26793873 tgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctattggt 26793774  T
Q  289 gcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtcttc 342  Q
    ||| ||||||||| ||| ||  || |||||||| || ||||||||| |||||||    
T  26793773 gcaccaaacaacggattgaatcaggatatgatagttctatcatatcatgtcttc 26793720  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 49288036 - 49287981
Alignment:
Q  266 ttattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgata 321  Q
    ||||||||||||||| |||||||||| |||| ||| ||||||| ||| ||||||||    
T  49288036 ttattttatcattttgtattggtgcaccaaataacaaatttaaataggatatgata 49287981  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 49236202 - 49236132
Alignment:
Q  270 tttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtct 340  Q
    |||||| ||||||||||||||| |||||||   |||| |  || ||||||||||| |||||||||||||||    
T  49236202 tttatccttttctattggtgcaccaaacaatagatttcatcaggatatgataattgtatcatatcctgtct 49236132  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 342
Target Start/End: Complemental strand, 36241598 - 36241450
Alignment:
Q  193 atcctgtttctaacccaactaaaacataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggtgcat 292  Q
    ||||| || ||||||||||||||||  |||||||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||||  || |     
T  36241598 atcctcttcctaacccaactaaaacgaaggattaaaataac-aaggatgaatatgataggataagcaatgagattattttatcattttctattattgtac 36241500  T
Q  293 caaacaacgaatttaagtagaatatgataattttatcatatcctgtcttc 342  Q
    |||||||   ||||||||   |||||||||||||||||||| ||||||||    
T  36241499 caaacaaatgatttaagtgagatatgataattttatcatattctgtcttc 36241450  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 340
Target Start/End: Complemental strand, 6452570 - 6452428
Alignment:
Q  198 gtttctaacccaactaaaacataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaac 297  Q
    |||||||||||||| |||||  ||||||| ||| |  |||  |||||| |||| ||| ||||||  | ||| |||||||| |  ||||||||||||||||    
T  6452570 gtttctaacccaacaaaaactaaggattagaattacaaagcgtgaataggataagattagtaataggtttaatttatcatatcttattggtgcatcaaac 6452471  T
Q  298 aacgaatttaagtagaatatgataattttatcatatcctgtct 340  Q
     | | |||||| | | ||| |||||||||||||||||||||||    
T  6452470 catggatttaaattggataggataattttatcatatcctgtct 6452428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 40054475 - 40054613
Alignment:
Q  202 ctaacccaactaaaacataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacg 301  Q
    |||||||| |||||||  |||||||||||||  ||||||  ||| |||||||| |  |||  | ||| |||||||||||||||||||||| |||||||      
T  40054475 ctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcattttctattggtgcaccaaacaaga 40054574  T
Q  302 aatttaagtagaatatgataattttatcatatcctgtct 340  Q
     |||||| ||| |||| ||| | |||||||||| |||||    
T  40054575 gatttaaataggatataatagtgttatcatatcatgtct 40054613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 6457633 - 6457563
Alignment:
Q  270 tttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtct 340  Q
    |||||||||||||||||||||| ||||||||  ||| ||  |  |||||||| || |||||||||||||||    
T  6457633 tttatcattttctattggtgcaccaaacaacagattgaatcatgatatgatagttctatcatatcctgtct 6457563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1298 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1298
Description:

Target: scaffold1298; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 2047 - 1953
Alignment:
Q  182 gtgtttttgctatcctgtttctaacccaactaaaacataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatca 276  Q
    |||||| ||||||||| ||| |||||||||||||||| | ||||| |||||||||||||||||| ||||||||| |||||  |||||||||||||    
T  2047 gtgtttatgctatcctatttgtaacccaactaaaacaaatgattagaataatgaaggatgaataggataggataggtaataggattattttatca 1953  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 30793557 - 30793465
Alignment:
Q  242 aataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatc 334  Q
    ||||||||||||||||||||  | |||||||||| ||||||| || ||||||||||||||  ||||||||| |||||||| | ||||||||||    
T  30793557 aataagataggataagtaataggtttattttatccttttctactgatgcatcaaacaacgggtttaagtaggatatgatagtgttatcatatc 30793465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 336
Target Start/End: Complemental strand, 39594743 - 39594604
Alignment:
Q  197 tgtttctaacccaactaaaacataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaa 296  Q
    |||| |||||||| | |||||  ||||| ||||| |  ||||||||||| |||| ||| ||||||  | ||| |||| ||| |  |||||||||| ||||    
T  39594743 tgttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcaccaaa 39594644  T
Q  297 caacgaatttaagtagaatatgataattttatcatatcct 336  Q
    ||||| |||||||||| |||||||| ||||||||||||||    
T  39594643 caacggatttaagtaggatatgatagttttatcatatcct 39594604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 342
Target Start/End: Complemental strand, 39645009 - 39644867
Alignment:
Q  200 ttctaacccaactaaaacataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaa 299  Q
    |||||||||| | |||||  ||||| |||||||  |||||||| || |||||||| |  |||| | |||  ||||| ||||||||||| ||| |||||||    
T  39645009 ttctaacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaa 39644910  T
Q  300 cgaatttaagtagaatatgataattttatcatatcctgtcttc 342  Q
    | |||| || ||  |||||||| ||||||||||||||||||||    
T  39644909 caaattgaaatatgatatgatagttttatcatatcctgtcttc 39644867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 7667491 - 7667431
Alignment:
Q  252 gataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagtag 312  Q
    ||||||||||  | |||||||||| |||||||||| ||||||||||||||| |||||||||    
T  7667491 gataagtaataggtttattttatccttttctattgatgcatcaaacaacgattttaagtag 7667431  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 340
Target Start/End: Original strand, 39795286 - 39795389
Alignment:
Q  237 ggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcct 336  Q
    |||||||||||||| ||| ||||||    ||| |||||||| ||||||||||||| ||||||||  |||||||||| |||||||| | |||||||||| |    
T  39795286 ggatgaataagatatgattagtaatcgatttaatttatcatattctattggtgcaccaaacaacatatttaagtaggatatgatagtgttatcatatcat 39795385  T
Q  337 gtct 340  Q
    ||||    
T  39795386 gtct 39795389  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 342
Target Start/End: Original strand, 45818651 - 45818754
Alignment:
Q  239 atgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgt 338  Q
    |||||| |||||||||||  |||  | |||||||||| ||| ||| || |||| ||||||||| |||||||||| |||||||| | ||||||||||||||    
T  45818651 atgaatgagataggataaacaataggtttattttatcttttgctactgatgcaccaaacaacggatttaagtaggatatgatagtgttatcatatcctgt 45818750  T
Q  339 cttc 342  Q
    ||||    
T  45818751 cttc 45818754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 40416983 - 40416911
Alignment:
Q  270 tttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtcttc 342  Q
    ||||||||||||| ||| |||| ||||||||| ||| ||| || |||||||| |||| |||||||||||||||    
T  40416983 tttatcattttctgttgatgcaccaaacaacggattgaagcaggatatgatagttttttcatatcctgtcttc 40416911  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 831857 - 831794
Alignment:
Q  270 tttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatat 333  Q
    ||||||||||||| |||||||||||||||| ||||||||  |  ||| ||||||||||||||||    
T  831857 tttatcattttctcttggtgcatcaaacaatgaatttaaacatgataagataattttatcatat 831794  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 32490926 - 32490868
Alignment:
Q  282 tattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtct 340  Q
    |||||||||| ||||||| | |||||| |||||||||||| | ||||||||||||||||    
T  32490926 tattggtgcaccaaacaaaggatttaaatagaatatgatagtgttatcatatcctgtct 32490868  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 7038720 - 7038575
Alignment:
Q  189 tgctatcctgtttctaacccaactaaaacataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggt 288  Q
    ||||||| |||| |||||||||| ||||   ||||||| ||| |  || |||||||| |||||||| ||||||  | ||| |||||||| | ||||| ||    
T  7038720 tgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattagtaataggtttaatttatcatatcctattagt 7038621  T
Q  289 gcatcaaacaacgaatttaagtagaatatgataattttatcatatc 334  Q
    | | |||| || | |||||| ||| ||| |||||||||||||||||    
T  7038620 gtaccaaataatggatttaaataggataagataattttatcatatc 7038575  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 26543955 - 26543896
Alignment:
Q  281 ctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtct 340  Q
    ||||||||||| |||||||  ||||| ||||| |||||||||||||||||||||||||||    
T  26543955 ctattggtgcaccaaacaagaaatttgagtaggatatgataattttatcatatcctgtct 26543896  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 3346478 - 3346410
Alignment:
Q  265 attattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatat 333  Q
    |||| |||||| ||||||||| ||||| ||||||| |||||||| ||| ||| ||||||||||||||||    
T  3346478 attaatttatctttttctattagtgcaccaaacaatgaatttaattaggataggataattttatcatat 3346410  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 11811662 - 11811720
Alignment:
Q  282 tattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtct 340  Q
    |||||||||||||||||  ||||||||  |  ||||||| |||||||||||||||||||    
T  11811662 tattggtgcatcaaacattgaatttaaacacgatatgatcattttatcatatcctgtct 11811720  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 34731372 - 34731238
Alignment:
Q  202 ctaacccaactaaaacataggattaaaataatgaaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacg 301  Q
    |||||||| |||||||  |||||||||||||  ||||||  ||| |||||||| |  |||  | ||| |||||| ||| ||||||||||| ||||||| |    
T  34731372 ctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctattggtgcaccaaacaagg 34731273  T
Q  302 aatttaagtagaatatgataattttatcatatcct 336  Q
     |||||| ||| |||||||| | ||||||||||||    
T  34731272 gatttaaataggatatgatagtgttatcatatcct 34731238  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 7010641 - 7010704
Alignment:
Q  182 gtgtttttgctatcctgtttctaacccaactaaaacataggattaaaataatgaaggatgaata 245  Q
    |||||| ||||||||| ||| |||||||||||||| | ||||||| ||||||||| ||||||||    
T  7010641 gtgtttatgctatcctatttgtaacccaactaaaataaaggattagaataatgaaagatgaata 7010704  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 32529421 - 32529530
Alignment:
Q  235 aaggatgaataagataggataagtaatgagattattttatcattttctattggtgcatcaaacaacgaatttaagt-aga-atatgataattttatcata 332  Q
    |||||||||||||||| ||| || ||| || ||| |||||  |||| |||||||||| |||||| || ||| |||| ||| |||||||| ||||||||||    
T  32529421 aaggatgaataagatatgattagaaataagtttaatttattcttttttattggtgcaccaaacagcggattgaagtaagatatatgatagttttatcata 32529520  T
Q  333 tcctgtcttc 342  Q
    || |||||||    
T  32529521 tcttgtcttc 32529530  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 16290794 - 16290868
Alignment:
Q  266 ttattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatatcctgtct 340  Q
    |||||||||| ||| |||| || ||| ||||||| | ||||||  || ||| |||||||||||||||||||||||    
T  16290794 ttattttatcctttcctatgggagcaccaaacaaaggatttaaacaggataagataattttatcatatcctgtct 16290868  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 7010706 - 7010775
Alignment:
Q  264 gattattttatcattttctattggtgcatcaaacaacgaatttaagtagaatatgataattttatcatat 333  Q
    |||||||||||||| |  |||| ||||| |||| ||   |||||||||| ||||||||||||||||||||    
T  7010706 gattattttatcatatcttattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 7010775  T

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