View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_2 (Length: 742)
Name: NF17422_low_2
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 226 - 728
Target Start/End: Complemental strand, 48083776 - 48083274
Alignment:
| Q |
226 |
gtcaggaatgttgtagccattagagaaacgtccggtaggcctgtgacttggataatcaatgccatatggataattgtcggctcgggccgtggtagcaaga |
325 |
Q |
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| T |
48083776 |
gtcagggatattgtagccattagagaaacgccctgtaggcctgtgacttggataatcaatgccatatggataattgtcggctcgggccgtggtagcaaga |
48083677 |
T |
|
| Q |
326 |
aagtcattgttaccactttccactagagaatctccaaaaacaaagaaagctcttggttgagcataagaccaaccaacaaagcttatcattacacaaaaag |
425 |
Q |
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| T |
48083676 |
aagtcattgttaccactgtccactagagaatctccaaaaacaaagaaagctcttggttgagcataagcacaaccaacaaagcttatcattacacaaaaag |
48083577 |
T |
|
| Q |
426 |
caatcaccaaagaagtagccattgcaatgcaaaataattgagaggactgagaagtgttactaaattgtatgtgatgtatcaatttgataactcgtggttt |
525 |
Q |
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| T |
48083576 |
caatcaccaaagaagtagccattgcaatgcaaaataattgagaggactgagaagtgttactaaattgtatgtgatgtatcaatttgataactcgtggttt |
48083477 |
T |
|
| Q |
526 |
gtatggaacatgcaaatgagaagggtatatataaggttgaattcacacattctgtaaataacactcattaatgttattttctaccacacctcccagtgat |
625 |
Q |
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| T |
48083476 |
gtatggaacatgcaaatgagaagggtatatataaggttgaattcacacattctgtaaataacactcattaatgttattttctaccacacctcccagtgat |
48083377 |
T |
|
| Q |
626 |
ttaaagcaaaccgccgaatgaagaaaattcaagtgcctcacataattgctcaatgatcattgctcttaaattagatatagaattgaagtgaaaacatcca |
725 |
Q |
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| T |
48083376 |
ttaaagcaaaccgccgaatgaagaaaattcaagtgcctcacataattgctcaatgatcattggtcttaaattagatatagaattgaagtgaaaacatcca |
48083277 |
T |
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| Q |
726 |
tct |
728 |
Q |
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| T |
48083276 |
tct |
48083274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 48091782 - 48091602
Alignment:
| Q |
1 |
taaataaggcaacgttggttctgccccaagtgcttgacctgcaaaatcattgcatnnnnnnnnn-------ctatataagtttaatgttaatcacattat |
93 |
Q |
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| T |
48091782 |
taaataaggcaacgttggttctgccccaagtgcttgacctgcaaaatcattgcataaaaaaaaaaaaaaaactatataagtttaatgttaatcacattat |
48091683 |
T |
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| Q |
94 |
tatgggggatataaattttgcatggttgctgagtgagggagaattaggtcgaagattcaatcttcactctcaacatagaaat |
175 |
Q |
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| T |
48091682 |
tatgggggatataaattttgcatggttgctgagtgagggagaattaggtcgaagattcaatcttcactctcaa-atagaaat |
48091602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 48091611 - 48091513
Alignment:
| Q |
193 |
aaatagaaatgaatgattatcttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtaggcctgtgacttggataatcaatgccata |
291 |
Q |
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| T |
48091611 |
aaatagaaatgaatgattatcttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccata |
48091513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 48066212 - 48066128
Alignment:
| Q |
314 |
gtggtagcaagaaagtcattgttaccactttccac--tagagaatctccaaaaacaaagaaagctcttggttgagcataagaccaaccaa |
401 |
Q |
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| T |
48066212 |
gtggtagcaacaaaatcattgttaccactgtccactataaagaatctcccaaaacgaagaaa-----tggttgagcataaaaccaaccaa |
48066128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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