View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_20 (Length: 334)
Name: NF17422_low_20
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 229925 - 229857
Alignment:
| Q |
201 |
gccaagcttaagagtaaagcccctgcattggcacctgtgctctcgccatcagatgctcccgctcccgga |
269 |
Q |
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| T |
229925 |
gccaagcttaagagtaaagcccctgcattggcacctgtgctctcgccatcagatgctcccgctcccgga |
229857 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 230105 - 230041
Alignment:
| Q |
21 |
actcctccacctgttcagtctactccaccacctgcatcaccaccccctgcctcacctccaccatt |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230105 |
actcctccacctgttcagtctactccaccacctgcatcaccaccccctgcctcacctccaccatt |
230041 |
T |
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