View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_22 (Length: 303)
Name: NF17422_low_22
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 52108649 - 52108939
Alignment:
| Q |
13 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
112 |
Q |
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| T |
52108649 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
52108748 |
T |
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| Q |
113 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
212 |
Q |
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| T |
52108749 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
52108848 |
T |
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| Q |
213 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgagaaacgagtttctctttgcggcc |
303 |
Q |
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| T |
52108849 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggcc |
52108939 |
T |
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Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 44519922 - 44520208
Alignment:
| Q |
13 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||| |||||| |
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| T |
44519922 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcc-aattttttataaataccctaaaatacgaatcatgttttttctcacacta |
44520020 |
T |
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| Q |
113 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
212 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520021 |
caacccaaaattaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
44520120 |
T |
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| Q |
213 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgagaaacgagtttctctttgcg |
300 |
Q |
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| T |
44520121 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgaccctcgaaacgagtttctctttgcg |
44520208 |
T |
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