View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17422_low_24 (Length: 295)
Name: NF17422_low_24
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 278
Target Start/End: Complemental strand, 36948345 - 36948074
Alignment:
| Q |
7 |
aatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaa |
106 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
36948345 |
aatctcaaccacaacaaaaatcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaa |
36948246 |
T |
|
| Q |
107 |
gacagtgagatgagagagattccaagaattggcattacgatatcgagggagtaaaacaccaatctagttaatccaaatgttgcccaaaagagtatgataa |
206 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || || | || ||| | ||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36948245 |
gacagtgagatgagagcgattccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataa |
36948146 |
T |
|
| Q |
207 |
tagaactaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattgcatgatataggt |
278 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36948145 |
tagaactaatggaactgaataatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggt |
36948074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 53 - 278
Target Start/End: Original strand, 37069660 - 37069885
Alignment:
| Q |
53 |
gccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggcattacgatatcga |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||| | ||||||||| ||||| ||||| | | |
|
|
| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
153 |
gggagtaaaacaccaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
252 |
Q |
| |
|
| ||| || ||||||| ||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
253 |
tgcttgaaacattgcatgatataggt |
278 |
Q |
| |
|
||||| |||||||||||| |||||| |
|
|
| T |
37069860 |
agcttggaacattgcatgacataggt |
37069885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 37 - 278
Target Start/End: Original strand, 37079404 - 37079645
Alignment:
| Q |
37 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaatt |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| | |
|
|
| T |
37079404 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagt |
37079503 |
T |
|
| Q |
137 |
ggcattacgatatcgagggagtaaaacaccaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattg |
236 |
Q |
| |
|
||||| || || | || ||| || ||||||| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37079504 |
ggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattg |
37079603 |
T |
|
| Q |
237 |
tgatgaagataatgaatgcttgaaacattgcatgatataggt |
278 |
Q |
| |
|
||||||| |||||||| | || |||||||||||| |||||| |
|
|
| T |
37079604 |
tgatgaatataatgaaaacatggaacattgcatgacataggt |
37079645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 36956423 - 36956152
Alignment:
| Q |
5 |
aaaatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagcca |
104 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||| | |
|
|
| T |
36956423 |
aaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataacagtgtacagaccagcaatgaaagcaa |
36956324 |
T |
|
| Q |
105 |
aagacagtgagatgagagagattccaagaattggcattacgatatcgagggagtaaaa--caccaatctagttaatccaaatgttgcccaaaagagtatg |
202 |
Q |
| |
|
|||| | ||| ||||||| ||||||||||| |||| || || | || |||||||| |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
36956323 |
aagataatgaaatgagagcgattccaagaagcggcacaacaattttga--gagtaaaagttaccaattcagttaatccaagtgttgcccaaaagagtatg |
36956226 |
T |
|
| Q |
203 |
ataatagaactaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattgcatgatatag |
276 |
Q |
| |
|
|| ||| |||||| ||||||||||||||||||||||||||||||||||| | || |||||||||||| |||| |
|
|
| T |
36956225 |
atggtagcactaattgaactgaacaatgatattgtgatgaagataatgaaaacatggaacattgcatgacatag |
36956152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 36935573 - 36935298
Alignment:
| Q |
1 |
taacaaaatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaa |
100 |
Q |
| |
|
|||||||||| |||| || |||||||||| ||||||||||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36935573 |
taacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagaccagccatgaaa |
36935474 |
T |
|
| Q |
101 |
gccaaagacagtgagatgagagagattccaagaattggcattacgatatcgagggagtaaa-acaccaatctagttaatccaaatgttgcccaaaagagt |
199 |
Q |
| |
|
|||||||| | || || |||| ||||||||||| ||||| ||||| | ||| | ||||| || |||| |||||| ||||||||||||||||||||| |
|
|
| T |
36935473 |
gccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagag-gtaaagtcagcaattcagttaacccaaatgttgcccaaaagagt |
36935375 |
T |
|
| Q |
200 |
atgataatagaactaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattgcatgatatag |
276 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |||| |||| |
|
|
| T |
36935374 |
atgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaacattgtatgacatag |
36935298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 12493403 - 12493673
Alignment:
| Q |
7 |
aatctcaaccgcaacaaaaatcaatgccataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaa |
106 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||| |||||||||||||||| |
|
|
| T |
12493403 |
aatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactagccatgaaagccaaa |
12493502 |
T |
|
| Q |
107 |
gacagtgagatgagagagattccaagaattggcattacgatatcgagggagtaaaa--caccaatctagttaatccaaatgttgcccaaaagagtatgat |
204 |
Q |
| |
|
|| | || ||||||| ||||||||||| ||||| || || | || |||||||| |||||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
12493503 |
gataacgaaatgagagcgattccaagaagcggcatgaccattttga--gagtaaaagttaccaattcagttaacccaagtgttgcccaaaagagtatgat |
12493600 |
T |
|
| Q |
205 |
aatagaactaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaacattgcatgatatagg |
277 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||||||||||||||||| || || |||||||||||| ||||| |
|
|
| T |
12493601 |
agtagcactaatggaactgaacaacgatattgtgatgaagataatgaaagcatggaacattgcatgacatagg |
12493673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University