View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17422_low_26 (Length: 280)
Name: NF17422_low_26
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 17488664 - 17488401
Alignment:
| Q |
2 |
tggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgataatactcttccagagatcaaagcaaaagtg |
101 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17488664 |
tggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgataatactcttccagaggtcaaagcaaaagtg |
17488565 |
T |
|
| Q |
102 |
ttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaataatgacctaccttgaaaatcttcatctttcagtagtta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17488564 |
ttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacctgccttgaaaatcttcatctttcagtagtta |
17488465 |
T |
|
| Q |
202 |
acagtagagtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
265 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488464 |
acagtagtgtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
17488401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 17564550 - 17564813
Alignment:
| Q |
2 |
tggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgataatactcttccagagatcaaagcaaaagtg |
101 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17564550 |
tggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgataatactcttccagaggtcaaagcaaaagtg |
17564649 |
T |
|
| Q |
102 |
ttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaataatgacctaccttgaaaatcttcatctttcagtagtta |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17564650 |
ttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacctgccttgaaaatcttcatctttcagtagtta |
17564749 |
T |
|
| Q |
202 |
acagtagagtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
265 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17564750 |
acagtagtgtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
17564813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1869818 - 1869571
Alignment:
| Q |
1 |
ctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgataatactcttccagagatcaaagcaaaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
1869818 |
ctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaggtgataatactcttccagagatcaaagcaagagt |
1869719 |
T |
|
| Q |
101 |
gttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaataatgacctaccttgaaaatcttcatctttcagtagtt |
200 |
Q |
| |
|
|| | |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||| || ||||||||||||||||||| |
|
|
| T |
1869718 |
gtcaaaaaaagatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccaccttgcaagtcttcatctttcagtagtt |
1869619 |
T |
|
| Q |
201 |
aacagtagagtcttgaattttggaaaatccatccttgacatcaccatc |
248 |
Q |
| |
|
|| ||||| |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
1869618 |
aatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc |
1869571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 74 - 265
Target Start/End: Complemental strand, 1916910 - 1916719
Alignment:
| Q |
74 |
tactcttccagagatcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaataatgacctac |
173 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
1916910 |
tactcttccagaggtcaaagcaaaagtgttacaaaaagatgtacttgtcatagtccattgtgagaaacaaaatggtattctgctcaaaatactgacctac |
1916811 |
T |
|
| Q |
174 |
cttgaaaatcttcatctttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1916810 |
cttgaaaatcttcatctttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatcgttgccaaggtacatat |
1916719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University