View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_3 (Length: 688)
Name: NF17422_low_3
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 92 - 675
Target Start/End: Complemental strand, 5230181 - 5229605
Alignment:
| Q |
92 |
aacatgtttcactttccaataaataataattaaggttattattattgatagaacaatagataatattgtactaaactttgaaactgacataaaaagaatg |
191 |
Q |
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| T |
5230181 |
aacatgtttcactttccaataaataat---taaggttattatt---gatagaacaatagataatattgtactaaactttgaaactgacataaaaagaatg |
5230088 |
T |
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| Q |
192 |
gagtaaagtaacttactagattttgatttgatgtgctttctagggcatgttttgaacttgaaaatagaagtggaagaaatgaaactgagcctctcagcat |
291 |
Q |
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| T |
5230087 |
gagtaaagtaacttactagattttgatttgatgtgctttctagggcatgttttgaacttgaaaatagaagtggaagaaatgaaactgagcctctcagcaa |
5229988 |
T |
|
| Q |
292 |
acaaaactatagagaaaagaagaatgcagattgtggtaataatgattggaagagaaagctttttcctaagaagcttcattgtttctgaagggttcatgag |
391 |
Q |
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| T |
5229987 |
acaaaactatagagaagagaagaatgcagattgtggtaataatgattggaagagaaagctttttcctaagaagcttcattgtttctgaagggttcatgag |
5229888 |
T |
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| Q |
392 |
gaatggaagaagattaaagatgtgaagaaagagtatgaattaatgcattgagaaacaaaatgatgataaaattgttgagagggtttaatgannnnnnnnn |
491 |
Q |
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| T |
5229887 |
gaatggaagaagattaaagatgtgaagaaagagtatgaattaatgcattgagaaacaaaatgatgataaaattgttgagagggtttaatga-ttttattt |
5229789 |
T |
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| Q |
492 |
nnnnnnnnnnngagtaggagtgaagttaaagcatatatagtatatatgtttggttcattagttgtgattaaactatgccaatgatggtagttaagagtta |
591 |
Q |
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| T |
5229788 |
ttttattttttgagtaggagtgaagttaaagcatatatagtatatatgtttggttcattggttgtgattaaactatgccaatgatggtagttaagagtta |
5229689 |
T |
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| Q |
592 |
agacaagacttgaaaaattaacatctttgctggttaagaattaagataagactttgaaagattaacaacatctttggctctgtg |
675 |
Q |
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| T |
5229688 |
agacaagacttgaaagattaacatcttttgtggttaagaattaagataagactttgaaagattaacaacatctttggctttgtg |
5229605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 5230256 - 5230216
Alignment:
| Q |
17 |
acaagttttgttatttttgatgaaatcattcgtttttctgc |
57 |
Q |
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| T |
5230256 |
acaagttttgttatttttgaagaaattattcatttttctgc |
5230216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 25337834 - 25337764
Alignment:
| Q |
228 |
tttctagggcatgttttgaacttgaaaatagaagtggaagaaatgaaactgagcctctcagcatacaaaac |
298 |
Q |
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| T |
25337834 |
tttctagggcaaggtttgaacttgaaaatggacttagaagaaagaaaactgagtctctctgcatacaaaac |
25337764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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