View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_33 (Length: 251)
Name: NF17422_low_33
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_33 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 38873835 - 38874073
Alignment:
| Q |
10 |
ccaagaatattttctccatacaatacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactaccaaccac |
109 |
Q |
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| T |
38873835 |
ccaacaatattttctccatacaatacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactaccaaccac |
38873934 |
T |
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| Q |
110 |
attaattctctccttatattttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccaccactggttcttttttctgc |
209 |
Q |
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| T |
38873935 |
attaattctc--cttattttttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccaccactggttcttttttctgc |
38874032 |
T |
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| Q |
210 |
tgttccttctcacttacttgtgcttctccattcttgtaattg |
251 |
Q |
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| T |
38874033 |
tgttccttctcacctacttgtgtttctcca-tcttgtaattg |
38874073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 33 - 240
Target Start/End: Complemental strand, 38776917 - 38776709
Alignment:
| Q |
33 |
tacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactacca---accacattaattctctccttatatt |
129 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||| || |
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| T |
38776917 |
tacacaagaggaatttaatgggaatataaaaggcgggttctcttggttgaaccgcctatgatcgaactaccaccaaccacgttaattctc--cttatttt |
38776820 |
T |
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| Q |
130 |
ttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccaccactggttcttttttctgctgttccttctcacttacttg |
229 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
38776819 |
ttgaatctgacttaagtaccactaatgccagttgagtttcctgttcttctgtttttaccaccactggttcttttttctgttgttccttctcatctacttg |
38776720 |
T |
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| Q |
230 |
tgcttctccat |
240 |
Q |
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| T |
38776719 |
tgcttctccat |
38776709 |
T |
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