View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17422_low_34 (Length: 251)

Name: NF17422_low_34
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17422_low_34
NF17422_low_34
[»] chr5 (40 HSPs)
chr5 (9-232)||(35244891-35245114)
chr5 (138-213)||(3907630-3907703)
chr5 (33-120)||(12705037-12705124)
chr5 (48-119)||(14728121-14728192)
chr5 (135-210)||(33029465-33029540)
chr5 (48-117)||(15034113-15034182)
chr5 (10-82)||(25452926-25452997)
chr5 (9-117)||(35561818-35561926)
chr5 (32-120)||(42086349-42086437)
chr5 (33-120)||(9812895-9812982)
chr5 (9-120)||(41800976-41801087)
chr5 (9-119)||(40117414-40117524)
chr5 (9-82)||(14588652-14588725)
chr5 (137-214)||(17474862-17474939)
chr5 (31-120)||(21375372-21375461)
chr5 (10-118)||(11845800-11845908)
chr5 (137-213)||(4190149-4190227)
chr5 (137-220)||(27195335-27195417)
chr5 (10-120)||(4016252-4016362)
chr5 (32-82)||(7616942-7616992)
chr5 (139-213)||(40927696-40927770)
chr5 (137-207)||(41169486-41169556)
chr5 (9-98)||(7308383-7308472)
chr5 (136-173)||(9999795-9999832)
chr5 (18-119)||(12081916-12082017)
chr5 (143-207)||(25545199-25545261)
chr5 (32-120)||(9805026-9805114)
chr5 (33-120)||(12766154-12766241)
chr5 (9-80)||(14152049-14152120)
chr5 (138-212)||(4158053-4158127)
chr5 (18-68)||(21149742-21149792)
chr5 (34-108)||(24875369-24875443)
chr5 (61-119)||(28857197-28857255)
chr5 (27-120)||(13664277-13664370)
chr5 (29-82)||(35006770-35006823)
chr5 (9-69)||(20705562-20705622)
chr5 (143-207)||(22399749-22399813)
chr5 (63-119)||(28857002-28857058)
chr5 (32-112)||(39099784-39099864)
chr5 (139-199)||(42420121-42420181)
[»] chr8 (33 HSPs)
chr8 (138-232)||(23848240-23848332)
chr8 (32-119)||(45521193-45521280)
chr8 (137-207)||(20271109-20271179)
chr8 (137-207)||(21057737-21057807)
chr8 (139-215)||(42072637-42072711)
chr8 (137-213)||(2288689-2288765)
chr8 (10-120)||(26570927-26571037)
chr8 (31-120)||(583836-583925)
chr8 (24-120)||(22212512-22212609)
chr8 (9-82)||(33401834-33401907)
chr8 (138-207)||(36009918-36009987)
chr8 (137-185)||(8402594-8402642)
chr8 (32-112)||(11785940-11786020)
chr8 (163-219)||(34504461-34504517)
chr8 (9-112)||(44893283-44893386)
chr8 (137-205)||(4994253-4994319)
chr8 (9-82)||(22958772-22958845)
chr8 (137-215)||(8402455-8402529)
chr8 (24-120)||(11298264-11298360)
chr8 (34-82)||(18374037-18374085)
chr8 (141-205)||(27072913-27072977)
chr8 (143-203)||(38357548-38357608)
chr8 (33-120)||(10927632-10927719)
chr8 (9-80)||(13085526-13085597)
chr8 (32-117)||(4479296-4479381)
chr8 (18-119)||(16291201-16291302)
chr8 (146-195)||(17893299-17893348)
chr8 (140-205)||(40694589-40694654)
chr8 (140-205)||(40696286-40696351)
chr8 (140-213)||(43042228-43042301)
chr8 (143-207)||(13772376-13772440)
chr8 (139-183)||(36009847-36009891)
chr8 (143-207)||(40566552-40566616)
[»] chr1 (32 HSPs)
chr1 (138-215)||(34437685-34437762)
chr1 (139-207)||(40669025-40669091)
chr1 (8-80)||(10336514-10336586)
chr1 (138-207)||(7444255-7444324)
chr1 (27-120)||(28416963-28417056)
chr1 (10-82)||(30927763-30927835)
chr1 (9-119)||(32142845-32142955)
chr1 (9-106)||(14254280-14254377)
chr1 (9-82)||(48798106-48798179)
chr1 (143-212)||(49822619-49822688)
chr1 (139-219)||(939418-939498)
chr1 (35-119)||(16956491-16956575)
chr1 (10-82)||(17092513-17092585)
chr1 (138-213)||(7444371-7444446)
chr1 (32-82)||(50094926-50094976)
chr1 (33-82)||(10507721-10507770)
chr1 (137-205)||(15366474-15366542)
chr1 (32-120)||(18915889-18915977)
chr1 (148-207)||(21281461-21281521)
chr1 (32-119)||(9659178-9659265)
chr1 (32-119)||(11397888-11397975)
chr1 (35-118)||(14357780-14357863)
chr1 (32-119)||(26660160-26660246)
chr1 (4-119)||(32150921-32151036)
chr1 (169-212)||(34783438-34783481)
chr1 (18-80)||(18808273-18808335)
chr1 (34-120)||(44969688-44969774)
chr1 (142-204)||(45563044-45563106)
chr1 (32-82)||(47312935-47312985)
chr1 (34-119)||(10172970-10173055)
chr1 (32-120)||(34697357-34697445)
chr1 (143-199)||(38663630-38663686)
[»] chr4 (40 HSPs)
chr4 (139-207)||(3688667-3688735)
chr4 (143-212)||(21433964-21434033)
chr4 (136-232)||(993268-993364)
chr4 (137-194)||(16458028-16458085)
chr4 (135-212)||(33413974-33414051)
chr4 (10-107)||(41162892-41162989)
chr4 (140-207)||(7403179-7403246)
chr4 (32-119)||(17080069-17080156)
chr4 (32-118)||(7246645-7246731)
chr4 (9-119)||(10541019-10541128)
chr4 (143-213)||(15134657-15134727)
chr4 (143-212)||(52374896-52374965)
chr4 (139-215)||(15134542-15134618)
chr4 (35-119)||(24166479-24166563)
chr4 (8-107)||(20532419-20532518)
chr4 (152-207)||(21433861-21433916)
chr4 (33-120)||(53599087-53599174)
chr4 (9-119)||(16645121-16645231)
chr4 (41-118)||(14567274-14567351)
chr4 (16-120)||(12703542-12703646)
chr4 (134-214)||(41840563-41840643)
chr4 (32-112)||(49260670-49260750)
chr4 (23-118)||(49952144-49952240)
chr4 (140-207)||(9023886-9023953)
chr4 (136-211)||(31758779-31758854)
chr4 (10-117)||(40780861-40780968)
chr4 (32-118)||(29895813-29895899)
chr4 (142-212)||(32286322-32286392)
chr4 (139-169)||(34397388-34397418)
chr4 (142-212)||(48791211-48791280)
chr4 (138-207)||(2324732-2324801)
chr4 (32-117)||(13073564-13073649)
chr4 (142-207)||(28987249-28987314)
chr4 (9-118)||(30317236-30317345)
chr4 (31-68)||(37369091-37369128)
chr4 (138-167)||(38036357-38036386)
chr4 (33-82)||(42722612-42722661)
chr4 (142-199)||(45653991-45654047)
chr4 (38-82)||(15839970-15840014)
chr4 (7-119)||(16450301-16450413)
[»] chr3 (40 HSPs)
chr3 (32-120)||(26361965-26362053)
chr3 (139-213)||(36480682-36480756)
chr3 (135-199)||(35357288-35357352)
chr3 (143-207)||(36007451-36007515)
chr3 (143-215)||(36480795-36480867)
chr3 (136-215)||(3901581-3901659)
chr3 (137-215)||(19554359-19554437)
chr3 (137-215)||(19560602-19560680)
chr3 (32-82)||(33251683-33251733)
chr3 (143-212)||(1458628-1458697)
chr3 (139-204)||(14345126-14345191)
chr3 (9-106)||(30767259-30767356)
chr3 (29-117)||(3507534-3507622)
chr3 (136-215)||(29955010-29955089)
chr3 (136-215)||(30004164-30004243)
chr3 (138-231)||(1458514-1458605)
chr3 (24-82)||(7648753-7648811)
chr3 (32-82)||(26207837-26207887)
chr3 (33-82)||(3755592-3755641)
chr3 (146-207)||(37189240-37189301)
chr3 (33-82)||(39849093-39849142)
chr3 (35-120)||(47219168-47219253)
chr3 (33-118)||(54261248-54261333)
chr3 (31-112)||(55069685-55069766)
chr3 (32-120)||(8164574-8164662)
chr3 (143-215)||(26986272-26986344)
chr3 (32-120)||(41630510-41630598)
chr3 (33-120)||(15320208-15320295)
chr3 (32-119)||(23511588-23511675)
chr3 (9-120)||(29127917-29128028)
chr3 (18-112)||(24506654-24506747)
chr3 (139-220)||(32880972-32881053)
chr3 (9-118)||(45877452-45877561)
chr3 (9-74)||(49543517-49543582)
chr3 (34-82)||(6462435-6462483)
chr3 (34-94)||(26043835-26043895)
chr3 (143-215)||(31205348-31205420)
chr3 (137-181)||(35415091-35415135)
chr3 (139-167)||(37341386-37341414)
chr3 (61-117)||(53649777-53649833)
[»] chr7 (37 HSPs)
chr7 (141-215)||(12275826-12275900)
chr7 (9-118)||(38578866-38578975)
chr7 (139-207)||(3235534-3235602)
chr7 (143-207)||(5443625-5443689)
chr7 (143-207)||(5452670-5452734)
chr7 (133-215)||(40134474-40134554)
chr7 (137-215)||(26863001-26863079)
chr7 (9-82)||(22973968-22974041)
chr7 (142-207)||(49107001-49107066)
chr7 (32-112)||(13095882-13095962)
chr7 (32-120)||(43861969-43862057)
chr7 (9-80)||(22573814-22573884)
chr7 (33-120)||(22993364-22993451)
chr7 (138-215)||(10056711-10056788)
chr7 (9-82)||(23658180-23658253)
chr7 (139-212)||(2276256-2276325)
chr7 (48-112)||(45960008-45960072)
chr7 (32-120)||(49142666-49142754)
chr7 (33-112)||(4228759-4228838)
chr7 (140-207)||(31042115-31042182)
chr7 (4-106)||(41267935-41268038)
chr7 (48-119)||(43925552-43925623)
chr7 (137-199)||(26647794-26647856)
chr7 (32-82)||(36619289-36619339)
chr7 (32-106)||(42032120-42032194)
chr7 (34-120)||(48551883-48551969)
chr7 (33-82)||(365165-365214)
chr7 (146-199)||(31042407-31042460)
chr7 (31-112)||(39420860-39420941)
chr7 (137-197)||(316465-316525)
chr7 (9-81)||(4195238-4195310)
chr7 (138-213)||(12275714-12275787)
chr7 (8-120)||(14650317-14650429)
chr7 (18-118)||(37514931-37515031)
chr7 (9-121)||(47341877-47341989)
chr7 (139-207)||(47497796-47497864)
chr7 (32-120)||(48244353-48244441)
[»] chr6 (38 HSPs)
chr6 (28-118)||(24671865-24671955)
chr6 (143-214)||(1473594-1473665)
chr6 (33-120)||(8611971-8612058)
chr6 (140-211)||(24110039-24110110)
chr6 (139-207)||(17389993-17390061)
chr6 (138-205)||(5706717-5706784)
chr6 (139-215)||(4483343-4483417)
chr6 (139-215)||(10729951-10730025)
chr6 (9-82)||(13036039-13036112)
chr6 (139-212)||(4032960-4033035)
chr6 (151-207)||(4033088-4033144)
chr6 (33-120)||(21898674-21898761)
chr6 (33-120)||(30788850-30788937)
chr6 (138-207)||(4494370-4494437)
chr6 (10-84)||(11142606-11142680)
chr6 (142-207)||(479781-479846)
chr6 (139-232)||(28865461-28865553)
chr6 (9-82)||(32157202-32157275)
chr6 (139-207)||(12731529-12731597)
chr6 (32-84)||(29444798-29444850)
chr6 (18-106)||(34954630-34954718)
chr6 (137-172)||(479933-479968)
chr6 (139-194)||(4483475-4483530)
chr6 (137-180)||(4485736-4485779)
chr6 (32-119)||(5253221-5253308)
chr6 (9-120)||(6606094-6606205)
chr6 (9-120)||(8932663-8932774)
chr6 (9-120)||(8944129-8944240)
chr6 (23-82)||(12606446-12606505)
chr6 (33-112)||(17114902-17114981)
chr6 (140-187)||(24691920-24691967)
chr6 (137-184)||(31946937-31946984)
chr6 (137-215)||(28865383-28865461)
chr6 (32-74)||(29333182-29333224)
chr6 (146-199)||(4787821-4787874)
chr6 (33-118)||(8938737-8938822)
chr6 (33-82)||(14107393-14107442)
chr6 (19-119)||(31129189-31129289)
[»] chr2 (40 HSPs)
chr2 (136-194)||(25666907-25666965)
chr2 (143-212)||(42094293-42094362)
chr2 (4-112)||(39201513-39201621)
chr2 (33-120)||(7747296-7747383)
chr2 (135-205)||(35715071-35715141)
chr2 (35-118)||(44773287-44773370)
chr2 (145-215)||(15194516-15194586)
chr2 (18-119)||(10026614-10026715)
chr2 (135-208)||(12703567-12703640)
chr2 (9-118)||(16034935-16035044)
chr2 (142-207)||(33069145-33069210)
chr2 (27-120)||(34346284-34346377)
chr2 (143-214)||(3466476-3466547)
chr2 (148-199)||(12703456-12703507)
chr2 (32-120)||(331522-331610)
chr2 (139-207)||(16209471-16209539)
chr2 (32-72)||(25604615-25604655)
chr2 (32-120)||(37560194-37560282)
chr2 (135-167)||(42094192-42094224)
chr2 (32-119)||(16325616-16325703)
chr2 (176-215)||(33171611-33171650)
chr2 (33-120)||(41220657-41220744)
chr2 (140-207)||(41496035-41496102)
chr2 (143-213)||(12779481-12779550)
chr2 (10-68)||(16636114-16636172)
chr2 (8-82)||(16813200-16813273)
chr2 (8-82)||(16852479-16852552)
chr2 (138-207)||(18719707-18719774)
chr2 (32-82)||(24179589-24179639)
chr2 (139-213)||(37810121-37810195)
chr2 (9-82)||(13026446-13026519)
chr2 (9-82)||(14169644-14169717)
chr2 (9-118)||(19976806-19976915)
chr2 (18-119)||(29422222-29422323)
chr2 (8-73)||(31596476-31596541)
chr2 (9-82)||(38962761-38962834)
chr2 (149-205)||(6979095-6979150)
chr2 (135-207)||(9430233-9430305)
chr2 (18-74)||(15079490-15079546)
chr2 (28-80)||(45263704-45263756)
[»] scaffold0291 (1 HSPs)
scaffold0291 (32-119)||(6879-6966)
[»] scaffold0002 (1 HSPs)
scaffold0002 (32-119)||(594-681)
[»] scaffold0209 (1 HSPs)
scaffold0209 (31-120)||(12596-12685)
[»] scaffold0004 (1 HSPs)
scaffold0004 (35-112)||(94985-95063)
[»] scaffold0376 (1 HSPs)
scaffold0376 (33-118)||(12695-12780)
[»] scaffold0015 (1 HSPs)
scaffold0015 (138-195)||(201065-201122)
[»] scaffold0005 (1 HSPs)
scaffold0005 (41-118)||(250024-250101)
[»] scaffold0003 (1 HSPs)
scaffold0003 (138-199)||(136425-136486)
[»] scaffold0086 (1 HSPs)
scaffold0086 (18-82)||(26193-26257)
[»] scaffold0001 (1 HSPs)
scaffold0001 (32-119)||(65150-65237)
[»] scaffold0316 (1 HSPs)
scaffold0316 (18-119)||(1612-1713)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 35245114 - 35244891
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  35245114 gaatattgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgcccacctttgatggttcggaaatc 35245015  T
Q  109 ggtgtgaaagccggnnnnnnntatggataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcat 208  Q
     |||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35245014 cgtgtgagagccggaaaaaaatatggataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcat 35244915  T
Q  209 atgggtcacacatgatgtggtggg 232  Q
    | |||||||||||||| |||||||    
T  35244914 aggggtcacacatgatatggtggg 35244891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 3907630 - 3907703
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||  ||||||||||||| ||||||| |||||    
T  3907630 agagaaatgctagcaacacacattctaacaaacacttttcaacacac--tctttgattggttaaaattcacatggg 3907703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 12705037 - 12705124
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||| ||||||||||||||||||||||||||||| || ||||||| ||  ||||||| ||| || |||| ||||| |||||||    
T  12705037 ggaacaacgcttgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaagcc 12705124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 14728121 - 14728192
Alignment:
Q  48 cagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    ||||| |||||| |||||||||||||| ||||||||||| ||||||||||| ||||||| ||||| ||||||    
T  14728121 cagtgcgcatgcctctacgcatgagccggattagttgctcacctttgatgggtcggaaaccggtgcgaaagc 14728192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 33029465 - 33029540
Alignment:
Q  135 ataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatat 210  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||| | ||||| ||| ||| ||||||||||    
T  33029465 ataagagaaatgctagcaacacatattttaacatatacttttcaacacattctctttaattagttaaaattcatat 33029540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 15034113 - 15034182
Alignment:
Q  48 cagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||||||||||| ||||||||||||||||||||||||   ||||||||||| ||||||| || |||||||    
T  15034113 cagtgtgcatgcctctacgcatgagcctgattagttgtccacctttgatggatcggaaaccgatgtgaaa 15034182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 25452926 - 25452997
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||| |||||| ||||||||| |||||||| ||||||||||||||||||| |||||||| ||||| |||||||    
T  25452926 aataccgagtttaattttcag-gggaacaatgtttgaccagtgtgcatgcctctacgcacgagccggattagt 25452997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 35561926 - 35561818
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||||||||||| | || |||||||||||||   ||||||||| |||||| ||||| |||||||| ||||||| ||| ||| ||| | | |||||||||    
T  35561926 gaatatcgagttcgacttccagagggaacaacacctgaccagtgcgcatgcctctacacatgagccagattagtcgctcaccgttggtaggtcggaaatc 35561827  T
Q  109 ggtgtgaaa 117  Q
     ||||||||    
T  35561826 agtgtgaaa 35561818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 42086349 - 42086437
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||| |||||||||| |||||| |||||||||||||| ||||||| |   ||||||| ||| ||||||| ||||| |||||||    
T  42086349 gggaacaacgcttgaccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcggaaaccggtgcgaaagcc 42086437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 9812895 - 9812982
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||| ||| ||||||||||||||||||||||||| || ||||||| ||  ||||||| ||| || |||| ||||| |||||||    
T  9812895 ggaacaacgcttggccagtgtgcatgcttctacgcatgaaccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaagcc 9812982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 41800976 - 41801087
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    |||||||| |||| ||| |||  |||||||||| ||||||| || |||||  |||||||| ||||| ||||||| | | | ||||||||| ||||||| |    
T  41800976 gaatatcgggttcgattctcaaggggaacaacgcttgaccaatgcgcatgtctctacgcacgagccggattagtcgttcatctttgatgggtcggaaagc 41801075  T
Q  109 ggtgtgaaagcc 120  Q
    ||||||||||||    
T  41801076 ggtgtgaaagcc 41801087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 40117414 - 40117524
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||||||| ||| |||| ||| |||||||||| ||| |||||| |||||| |||||||||||||| ||||| | | | ||||||| ||| ||| ||| |    
T  40117414 gaatatcgaattcgatttccagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattaatcgttcacctttggtggatcgaaaacc 40117513  T
Q  109 ggtgtgaaagc 119  Q
    |||| ||||||    
T  40117514 ggtgcgaaagc 40117524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 14588725 - 14588652
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||| |||| ||||||||  |||| |||| |||||||||| |||||| |||||||||||||| |||||||    
T  14588725 gaatatcgggttcgattttcaggaggaataacgcttgaccagtgcgcatgcctctacgcatgagccggattagt 14588652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 17474939 - 17474862
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggt 214  Q
    ||||| ||||||| ||||| ||||||||||| |||||| |||||||||  |||||||||| || ||||||| ||||||    
T  17474939 aagaggaatgctaacaacatacattttaacacacacttttcaacacacactctttgattgattaaaattcacatgggt 17474862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 21375372 - 21375461
Alignment:
Q  31 agggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||| ||||||||||| ||||||||||||||||||| | ||||||| |   | ||||||||| ||||||| | ||| |||||||    
T  21375372 agggaacaacatttgaccagtgcgcatgcttctacgcatgagtcggattagtcgtccatctttgatggatcggaaaccagtgcgaaagcc 21375461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 11845908 - 11845800
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcg 109  Q
    ||||||| |||| ||||  || |||||||||||||| |||||| |||||| |||||| |||||||  |||| | ||  ||||||||||| | ||||| ||    
T  11845908 aatatcgggttcgatttcgagggggaacaacgtttggccagtgcgcatgcctctacgtatgagccgaattaatcgcccacctttgatgggttggaaaccg 11845809  T
Q  110 gtgtgaaag 118  Q
    |||||||||    
T  11845808 gtgtgaaag 11845800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 4190227 - 4190149
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacac--tttctttgattggttgaaattcatatggg 213  Q
    ||||||||||||||||||| ||||| ||||| |||||| |||||||||  | |||||||| |||| ||||||| |||||    
T  4190227 aagagaaatgctagcaacatacattctaacacacacttttcaacacacggtctctttgataggttaaaattcacatggg 4190149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 27195417 - 27195335
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtcacaca 220  Q
    |||||||||||||| |||||||||||||||| |||||| ||||  |||| |||||||||| || ||||||| ||| ||| ||||    
T  27195417 aagagaaatgctagtaacacacattttaacacacactt-tcaatgcactctctttgattgattaaaattcacatgagtcccaca 27195335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 4016362 - 4016252
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcg 109  Q
    ||||||| |||| ||| |||| |||||||||  ||| |||||| |||||| ||||| || ||||| ||||||||||| ||| ||| ||| ||||||| |     
T  4016362 aatatcgggttcgattatcagggggaacaacacttggccagtgcgcatgcctctacacacgagccggattagttgctcaccattggtgggtcggaaacca 4016263  T
Q  110 gtgtgaaagcc 120  Q
    ||| |||||||    
T  4016262 gtgcgaaagcc 4016252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 7616942 - 7616992
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||||||||||||||| ||||||| |||||||||||| | |||||||    
T  7616942 gggaacaacgtttgaccagtatgcatgcctctacgcatgagtcagattagt 7616992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 40927770 - 40927696
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    ||||||||||||||||||||||| ||||| | | || |||||| ||| ||||||||||||  ||||||| |||||    
T  40927770 gagaaatgctagcaacacacattataacacaaatttttcaacaaactatctttgattggtcaaaattcacatggg 40927696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 41169556 - 41169486
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||||||||| |||||| ||||||||| ||| || |||||||||| ||||||||  ||| |||||||    
T  41169556 aagagaaatgctagtaacacatattttaacacacatttttcaacacactctctttgatccgttaaaattca 41169486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 7308472 - 7308383
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatgg 98  Q
    |||||||| |||| |||  ||| |||||||||| |||  |||||  ||||| |||||||||||||| ||||||| ||| |||||||||||    
T  7308472 gaatatcgggttcgattcccagggggaacaacgcttgggcagtgcacatgcctctacgcatgagccggattagtcgctcacctttgatgg 7308383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 9999832 - 9999795
Alignment:
Q  136 taagagaaatgctagcaacacacattttaacatacact 173  Q
    |||||||||||||||||||||||||||||||| |||||    
T  9999832 taagagaaatgctagcaacacacattttaacacacact 9999795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 12081916 - 12082017
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||| ||| |||| |||||||||| ||| |||||| |||||| |||||||| |||||  |||||| |   ||||||| ||  ||||||||||||||||||    
T  12081916 gttcgattctcagggggaacaacgcttggccagtgcgcatgcatctacgcacgagccgaattagtcgtccacctttggtgagtcggaaatcggtgtgaaa 12082015  T
Q  118 gc 119  Q
    ||    
T  12082016 gc 12082017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 25545199 - 25545261
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||||||| ||||||||||||| ||| || |||||||||  ||||||||||||| |||||||    
T  25545199 aatgctagcaatacacattttaacacacatttttcaacacac--tctttgattggttaaaattca 25545261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 9805026 - 9805114
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||| ||| |||||| |||||| |||||||||||||| ||||||| |   ||||||| ||| |||||||  |||| |||||||    
T  9805026 gggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcggaaacaggtgcgaaagcc 9805114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 12766154 - 12766241
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||| | ||| ||||||||||||| ||||||||||| || ||||||| ||  ||||||| ||| || |||| ||||| |||||||    
T  12766154 ggaacaatgcttggccagtgtgcatgcctctacgcatgaaccagattagtcgcccacctttggtgggtcagaaaccggtgcgaaagcc 12766241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 14152049 - 14152120
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgatta 80  Q
    ||||| || |||| ||| ||| ||||||||||| ||| ||||||||||||||||||  |||||||| |||||    
T  14152049 gaataccgggttcgattctcatagggaacaacgcttggccagtgtgcatgcttctatccatgagccggatta 14152120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 4158053 - 4158127
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    |||| |||||||  |||||||||||||||| ||| || |||| | | |||||||||| |||||||||||| ||||    
T  4158053 agaggaatgctaagaacacacattttaacacacaattttcaatatattttctttgatcggttgaaattcacatgg 4158127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 21149742 - 21149792
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgca 68  Q
    |||| |||||||| ||||||||||||||||||||| |||||  ||||||||    
T  21149742 gttcgattttcagggggaacaacgtttgaccagtgcgcatgactctacgca 21149792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 24875369 - 24875443
Alignment:
Q  34 gaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||||||||||||||||| |||||  |||||||| ||||| ||||| | |   ||||||||||| |||||||||    
T  24875369 gaacaacgtttgaccagtgcgcatgtctctacgcacgagccggattaatcgtccacctttgatgggtcggaaatc 24875443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 28857197 - 28857255
Alignment:
Q  61 tctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||||||| ||||||| ||| ||||||| ||| ||||||| ||||| ||||||    
T  28857197 tctacgcatgagccggattagtcgctcacctttggtgggtcggaaaccggtgcgaaagc 28857255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 13664277 - 13664370
Alignment:
Q  27 tcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||| |||||||||  ||| |||||| |||||| |||||||||||||| ||||| | | | ||||||| ||  ||||||| ||||| |||||||    
T  13664277 tcagggggaacaacacttggccagtgcgcatgcctctacgcatgagccagattaatcgatcacctttggtgtgtcggaaaccggtgcgaaagcc 13664370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 35006823 - 35006770
Alignment:
Q  29 agagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||||||||| |||  |||||||||||| |||||||| ||||| |||||||    
T  35006823 agagggaacaacgcttggtcagtgtgcatgcctctacgcacgagccagattagt 35006770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 20705562 - 20705622
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcat 69  Q
    ||||||||  |||||||||||| | ||||||||||||  ||||| |||||| |||||||||    
T  20705562 gaatatcggattcaattttcagggagaacaacgtttggtcagtgcgcatgcctctacgcat 20705622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 22399749 - 22399813
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||||||||||||||| ||| |  ||||| |||||||||| | ||||||||| | |||||||    
T  22399749 aatgctagcaacacacattctaatactcacttttcaacacactctttttgattggataaaattca 22399813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 28857002 - 28857058
Alignment:
Q  63 tacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||||| ||||||| ||| ||||||| ||| ||||||| ||||| ||||||    
T  28857002 tacgcatgagccggattagtcgctcacctttggtgggtcggaaaccggtgcgaaagc 28857058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 39099864 - 39099784
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    |||||||||  ||| ||||||  ||||| |||||||||||||| ||||||| ||  ||||||| ||| ||||||| |||||    
T  39099864 gggaacaacacttggccagtgcacatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaaccggtg 39099784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 42420181 - 42420121
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggtt 199  Q
    |||||||| |||||||||||||| ||| | || ||| |||||||||| | |||||||||||    
T  42420181 gagaaatgttagcaacacacattctaaaacacgcttttcaacacactctatttgattggtt 42420121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 23848240 - 23848332
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtcacacatgatgtggtggg 232  Q
    |||||||||||| |||||||||||||||||  ||||| |||||||||| |||||||||| || ||||||||||||| | |||||||| |||||||    
T  23848240 agagaaatgctaacaacacacattttaaca--cacttttcaacacactatctttgattgattaaaattcatatgggacccacatgatttggtggg 23848332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 45521193 - 45521280
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||  |||| ||||| |||||| |||||||||||||| ||||||| ||| ||||||||||| ||||||| ||||| ||||||    
T  45521193 gggaacaacacttgatcagtgcgcatgcctctacgcatgagccggattagtcgctcacctttgatgggtcggaaaccggtgcgaaagc 45521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 20271179 - 20271109
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||||| ||||||||||||||||||||  ||||| |||||||||| ||||||||| ||| |||||||    
T  20271179 aagagaaatgttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattca 20271109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 21057807 - 21057737
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||||| ||||||||||||||||||||  ||||| |||||||||| ||||||||| ||| |||||||    
T  21057807 aagagaaatgttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattca 21057737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 42072637 - 42072711
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    |||||||||||||||| |||||||||||| |||||  |||||||||| ||||||||||||| | ||||| |||||||    
T  42072637 gagaaatgctagcaacgcacattttaacacacact--tcaacacactctctttgattggttaacattcacatgggtc 42072711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 2288765 - 2288689
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    ||||||||||||||||||||||||| ||| | |||||| ||||||  || ||||||||||||| ||||||| |||||    
T  2288765 aagagaaatgctagcaacacacattctaaaagacacttttcaacaatctctctttgattggttaaaattcacatggg 2288689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 26570927 - 26571037
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcg 109  Q
    ||||||| ||||||||   || |||||||||| ||| |||||||| |||| |||||||||||||| ||||||| |   ||||||||||  ||||||| ||    
T  26570927 aatatcgggttcaattcctagggggaacaacgcttggccagtgtgtatgcatctacgcatgagccggattagtcgtccacctttgatgagtcggaaaccg 26571026  T
Q  110 gtgtgaaagcc 120  Q
     ||||||||||    
T  26571027 atgtgaaagcc 26571037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 583836 - 583925
Alignment:
Q  31 agggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||||| |||||||||| |||||| |||||||||||| | ||||||| ||  ||||||||||| |  |||| ||||| |||||||    
T  583836 agggaacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgcccacctttgatggattagaaaccggtgcgaaagcc 583925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 22212609 - 22212512
Alignment:
Q  24 ttttcagagggaacaacg-tttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||  ||||||||| ||||||||||  ||||||||||||||| | ||| ||||||| ||| ||||||| ||||||| ||| ||||| |||||||    
T  22212609 ttttcaggtggaacaacgctttgaccagtacgcatgcttctacgcacgggccggattagtcgctcacctttggtggttcgaaaaccggtgcgaaagcc 22212512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 33401907 - 33401834
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||| || |||| |||||||| |||||||||  ||||||||||||||||| |||||||||||| | |||||||    
T  33401907 gaataccgggttcgattttcagggggaacaacacttgaccagtgtgcatgcctctacgcatgagtcggattagt 33401834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 36009987 - 36009918
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||| ||||||||||||| ||||||||||| ||||||  ||||||||| |||||| |||||| |||||||    
T  36009987 agaggaatgctagcaacaaacattttaacacacactttccaacacactctctttggttggttaaaattca 36009918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 8402642 - 8402594
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacact 185  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  8402642 aagaggaatgctagcaacacacattttaacacacacttttcaacacact 8402594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 11785940 - 11786020
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    |||| |||||||||  |||||||||||| |||||||||||||| ||||| | ||| | ||||||||| ||||||| |||||    
T  11785940 gggagcaacgtttgggcagtgtgcatgcctctacgcatgagccagattaatcgctcatctttgatggatcggaaaccggtg 11786020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 34504517 - 34504461
Alignment:
Q  163 taacatacacttgtcaacacactttctttgattggttgaaattcatatgggtcacac 219  Q
    |||||||||||| |||||||||||| ||||||||||| ||||||  |||||||||||    
T  34504517 taacatacacttttcaacacactttttttgattggttaaaattcgcatgggtcacac 34504461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 44893386 - 44893283
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||| || |||||||||  || |||||||| | ||| ||||||||||||| |||||||| ||||| ||||| | ||| ||| ||||||| ||||||| |    
T  44893386 gaataccgggttcaatttctagggggaacaatgcttggccagtgtgcatgcctctacgcacgagccggattaatcgctcacccttgatgggtcggaaacc 44893287  T
Q  109 ggtg 112  Q
    ||||    
T  44893286 ggtg 44893283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 4994319 - 4994253
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaatt 205  Q
    |||||||| |||||||||||||||||||||| ||| || | |||||||  ||||||||||||| |||||    
T  4994319 aagagaaacgctagcaacacacattttaacacacaatttttaacacac--tctttgattggttaaaatt 4994253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 22958772 - 22958845
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||||| ||| ||||||||||||||||| | |||  |||||||||||  |||| ||||||||| |||||||    
T  22958772 gaatatcgaattcgattttcagagggaacaatgcttggtcagtgtgcatgtctctatgcatgagccggattagt 22958845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 8402455 - 8402529
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||||||||||||||||||  ||||||  |||||| |||||||||  |||||||||| || ||||||| |||||||    
T  8402455 aagagaaatgctagcaacacactgtttaac--acacttttcaacacac--tctttgattgtttaaaattcacatgggtc 8402529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 11298360 - 11298264
Alignment:
Q  24 ttttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||||||||||  ||  |||||| |||||| |||| |||||||||  |||| | ||| ||||||| ||| ||||||| ||||| |||||||    
T  11298360 ttttcagagggaacaacacttagccagtgcgcatgcctctatgcatgagccaaattaatcgctcacctttggtgggtcggaaaccggtgcgaaagcc 11298264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 18374037 - 18374085
Alignment:
Q  34 gaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||| |||||||||| |||||| |||||||||||||| |||||||    
T  18374037 gaacaacgcttgaccagtgcgcatgcctctacgcatgagccggattagt 18374085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 27072977 - 27072913
Alignment:
Q  141 gaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaatt 205  Q
    ||||| ||||||||||| ||||||||| |||||| |||||||| | | ||||||||||| |||||    
T  27072977 gaaatactagcaacacatattttaacacacacttttcaacacattctttttgattggttaaaatt 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 38357548 - 38357608
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaa 203  Q
    ||||||||||||||||||| || || ||||||  ||||||||| ||||||||| |||||||    
T  38357548 aatgctagcaacacacattctagcacacactttccaacacactctctttgattagttgaaa 38357608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 10927632 - 10927719
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||| ||| |||||| |||||| |||||||||||||| ||||||| | | ||||||  ||| ||||||| || || |||||||    
T  10927632 ggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccgatgcgaaagcc 10927719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 13085526 - 13085597
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgatta 80  Q
    ||||| || |||| ||| ||||||||||||||||||  ||||||||||| | |||||||| ||||| |||||    
T  13085526 gaataccgggttcgattctcagagggaacaacgtttagccagtgtgcatacctctacgcacgagccagatta 13085597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 4479381 - 4479296
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||||||||| ||| |||||| |||||| |||||||||||||  ||||||| |   ||||||| ||| ||||||| ||||| ||||    
T  4479381 gggaacaacgcttggccagtgcgcatgcctctacgcatgagctggattagtcgtccacctttggtgggtcggaaaccggtgcgaaa 4479296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 16291302 - 16291201
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||| |||||||| |||||||||  ||| |||||   ||||| |||| ||||||||  ||||||| ||| ||||||| ||| ||| ||| ||||||||||    
T  16291302 gttcgattttcagggggaacaacacttggccagtacacatgcctctatgcatgagctggattagtcgctcacctttggtgggtcgaaaaccggtgtgaaa 16291203  T
Q  118 gc 119  Q
    ||    
T  16291202 gc 16291201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 17893299 - 17893348
Alignment:
Q  146 gctagcaacacacattttaacatacacttgtcaacacactttctttgatt 195  Q
    |||||||||||||||||||||||||| || | |||| ||| |||||||||    
T  17893299 gctagcaacacacattttaacatacattttttaacagactctctttgatt 17893348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 40694589 - 40694654
Alignment:
Q  140 agaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaatt 205  Q
    ||||||||||||||||||| |||||||| ||| ||  ||||||| | | ||||||||||| |||||    
T  40694589 agaaatgctagcaacacacgttttaacacacattttacaacacaatctatttgattggttaaaatt 40694654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 40696351 - 40696286
Alignment:
Q  140 agaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaatt 205  Q
    ||||||||||||||||||| |||||||| ||| ||  ||||||| | ||||| ||||||| |||||    
T  40696351 agaaatgctagcaacacacgttttaacacacattttgcaacacaatctctttcattggttaaaatt 40696286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 43042301 - 43042228
Alignment:
Q  140 agaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    |||||||||  ||| ||| |||||||| || |||| |||| ||||| | ||||||||||| |||||||||||||    
T  43042301 agaaatgcttacaatacatattttaacgtatacttttcaatacactctttttgattggttaaaattcatatggg 43042228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 13772376 - 13772440
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||| ||||||| ||||||||||||| || |||| ||| ||| |||||||| || |||||||    
T  13772376 aatgctaacaacacatattttaacatacatttttcaatacattttttttgattgattaaaattca 13772440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 36009847 - 36009891
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacaca 183  Q
    ||||||||||||||||||||||| ||||| ||||||  |||||||    
T  36009847 gagaaatgctagcaacacacattctaacacacactttccaacaca 36009891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 40566616 - 40566552
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||| |||||||||||||||||||| | | || ||||||| || | ||||||||||| |||||||    
T  40566616 aatgttagcaacacacattttaacacatatttttcaacacgctctttttgattggttaaaattca 40566552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 34437762 - 34437685
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||| ||||||||||||||||||||||  ||||| |||||||||| ||||||||||||| ||||||| |||||||    
T  34437762 agagaaacgctagcaacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacatgggtc 34437685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 40669091 - 40669025
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||||||| |||||||    
T  40669091 gagaaatgctagcaacacacattttaac--acacttttcaacacactctctttgattggttaaaattca 40669025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 10336514 - 10336586
Alignment:
Q  8 agaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgatta 80  Q
    ||||||||| |||| |||||||| |||||||||| |||||||||| |||||| |||||||||||||| |||||    
T  10336514 agaatatcgggttcgattttcagggggaacaacgcttgaccagtgcgcatgcctctacgcatgagccggatta 10336586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 7444255 - 7444324
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||||||||||||||||||||||||| ||| || |||||||| ||||||| || |||| |||||||    
T  7444255 agagaaatgctagcaacacacattttaacacacatttttcaacacattttctttaatcggttaaaattca 7444324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 28416963 - 28417056
Alignment:
Q  27 tcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||||||||||||| |||| | |||||| |||||||| || || ||||||||||| ||  ||||||| ||| ||| |||||||||||||    
T  28416963 tcagagggaacaacgtttggccagggcgcatgcatctacgcacgaacccgattagttgctcactattgatggatcgaaaaccggtgtgaaagcc 28417056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 30927835 - 30927763
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||| |||| |||| |||||||||||||| ||| ||| ||||||||| |||||||||||||| |||||||    
T  30927835 aatatcgggttcgatttccagagggaacaacgcttggccaatgtgcatgcctctacgcatgagccggattagt 30927763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 32142955 - 32142845
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||| || |||| |||||||| |||||||||  ||| |||||| |||||| | ||||||||||||  |||||| ||| ||||||||||| ||||||| |    
T  32142955 gaataccgggttcgattttcagggggaacaacacttggccagtgcgcatgcctttacgcatgagccgaattagtcgctcacctttgatgggtcggaaacc 32142856  T
Q  109 ggtgtgaaagc 119  Q
    | || ||||||    
T  32142855 gatgcgaaagc 32142845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 14254377 - 14254280
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaa 106  Q
    ||||| ||||||| |||||||| |||||||||| ||| |||||  |||||| | |||||||||||| ||||||| |   ||||||||||| |||||||    
T  14254377 gaataccgagttcgattttcagggggaacaacgcttggccagtacgcatgcctttacgcatgagccggattagtcgtccacctttgatgggtcggaaa 14254280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 48798179 - 48798106
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||| |||| |||| ||| |||||||||| ||||| |||| |||||| |||||||||||||| |||||||    
T  48798179 gaatatcgggttcgatttccagggggaacaacgcttgactagtgcgcatgcctctacgcatgagccggattagt 48798106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 49822688 - 49822619
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    ||||||||||||||| ||| ||||| ||| || |||||||||| ||||||||||||| ||||||| ||||    
T  49822688 aatgctagcaacacatattataacacacatttttcaacacactctctttgattggttaaaattcacatgg 49822619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 939498 - 939418
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtcacac 219  Q
    ||||||||||||||| ||||||||||||||||   | |||||||| | ||||||||||||| ||||| | ||||| |||||    
T  939498 gagaaatgctagcaagacacattttaacatacgtatttcaacacattatctttgattggttaaaatttacatgggacacac 939418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 16956491 - 16956575
Alignment:
Q  35 aacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||||||||||| |||||| |||||||| ||||| |||||||  || ||||||| ||| ||||||| | ||| ||||||    
T  16956491 aacaacgtttgaccagtgcgcatgcctctacgcacgagccggattagtcactcacctttggtgggtcggaaaccagtgcgaaagc 16956575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 17092585 - 17092513
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||||||| |||||||| || ||||||| ||| |||||||| |||| |||||||| ||||| |||||||    
T  17092585 aatatcgagttcgattttcaggggaaacaacgattggccagtgtgtatgcctctacgcacgagccggattagt 17092513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 7444446 - 7444371
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    ||||||||| |||||||||||||| ||||| |||||| |||||||| | ||||||||  ||| ||||||| |||||    
T  7444446 agagaaatgttagcaacacacattctaacaaacacttttcaacacattctctttgatgagttaaaattcacatggg 7444371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 50094926 - 50094976
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||||||||||||||||  ||||||||||||||||||| | |||||||    
T  50094926 gggaacaacgtttgaccagtacgcatgcttctacgcatgagtcggattagt 50094976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 10507721 - 10507770
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||||||||| ||||||||||| | |||||||||||||| |||||||    
T  10507721 ggaacaacgtttggccagtgtgcatacctctacgcatgagccggattagt 10507770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 15366474 - 15366542
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaatt 205  Q
    ||||| ||||||||||||||||||| ||| | ||||||  ||||||||| | ||||||||||| |||||    
T  15366474 aagaggaatgctagcaacacacattctaagacacactttccaacacactctttttgattggttaaaatt 15366542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 18915889 - 18915977
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||  ||| ||||||||||||| |||||||| ||||| ||||||| ||| ||| ||| ||| | ||||| ||||| |||||||    
T  18915889 gggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcgctcaccattggtgggttggaaaccggtgcgaaagcc 18915977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 21281461 - 21281521
Alignment:
Q  148 tagcaacacacattttaacatacacttgtcaacacact-ttctttgattggttgaaattca 207  Q
    |||||||||| |||||||||||||||| |||||||| | || ||||||||||| |||||||    
T  21281461 tagcaacacatattttaacatacacttttcaacacattcttttttgattggttaaaattca 21281521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 9659265 - 9659178
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||||||||| |||| |||||| | |||||||||||| ||||||| |   ||||||| ||| | ||||| ||||| ||||||    
T  9659265 gggaacaacgtttgactagtgcgcatgcctttacgcatgagccggattagtcgtccacctttggtgggttggaaaccggtgcgaaagc 9659178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 11397975 - 11397888
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||||||| ||| || | |||| |||||||||||| | ||||||| |   ||||||| ||| ||||||||||||| ||||||    
T  11397975 gggaacaacgtttggccaatgcgtatgcctctacgcatgagtcggattagtcgtccacctttggtgggtcggaaatcggtgcgaaagc 11397888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 14357780 - 14357863
Alignment:
Q  35 aacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    |||||||||||||||||| |||||| |||||||| || || ||||| | | | ||| ||||||| ||||||| ||||| |||||    
T  14357780 aacaacgtttgaccagtgcgcatgcctctacgcacgaaccggattaatcgtttaccattgatgggtcggaaaccggtgcgaaag 14357863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 26660160 - 26660246
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    ||||||||| ||||| ||||  |||||| |||||||||||||| ||||||| ||  ||||||| ||| ||||||| ||||| ||||||    
T  26660160 gggaacaacatttgatcagtacgcatgcctctacgcatgagccggattagtcgc-cacctttggtgggtcggaaaccggtgcgaaagc 26660246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 32151036 - 32150921
Alignment:
Q  4 tcgaagaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcgg 103  Q
    |||| |||||||  |||| |||| ||| ||||||||| ||||  ||||| |||||| | ||||||||||||  |||||| ||| ||||||||||| |||     
T  32151036 tcgaggaatatcaggttcgatttccagggggaacaacatttggtcagtgcgcatgcctttacgcatgagccgaattagtcgctcacctttgatgggtcga 32150937  T
Q  104 aaatcggtgtgaaagc 119  Q
    ||| || || ||||||    
T  32150936 aaaccgatgcgaaagc 32150921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 34783481 - 34783438
Alignment:
Q  169 acacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    |||||| |||||||||| ||||||||||||| ||||||||||||    
T  34783481 acacttctcaacacactatctttgattggttaaaattcatatgg 34783438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 18808273 - 18808335
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgatta 80  Q
    |||||||| ||||||||||||||| |||||||||| |||||| | || | ||||||| |||||    
T  18808273 gttcaattctcagagggaacaacgcttgaccagtgcgcatgcctttatgtatgagccggatta 18808335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 44969688 - 44969774
Alignment:
Q  34 gaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||| ||| |||||||||||||  ||||||||||||| ||||||| |   | | ||| ||| ||||||| |||||||||||||    
T  44969688 gaacaacgcttggccagtgtgcatgcccctacgcatgagccggattagtcgtccatcattggtggatcggaaaccggtgtgaaagcc 44969774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 45563044 - 45563106
Alignment:
Q  142 aaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaat 204  Q
    ||||||||||||||| || ||||||||||| ||   |||||||| ||||||||||||| ||||    
T  45563044 aaatgctagcaacacccaatttaacatacattttctaacacactatctttgattggttaaaat 45563106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 47312985 - 47312935
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||||||||| |||||| | |||| |||||||||||||| |||||||    
T  47312985 gggaacaacgtttggccagtgcgtatgcctctacgcatgagccagattagt 47312935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 10173055 - 10172970
Alignment:
Q  34 gaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||| ||| ||||||  ||||| |||||||||||||| ||||| | ||  ||||||| ||| ||||||| ||||| ||||||    
T  10173055 gaacaacgcttggccagtgcccatgcctctacgcatgagccggattactcgcccacctttggtgggtcggaaaccggtgcgaaagc 10172970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 34697357 - 34697445
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||  ||| | ||||||||||| |||||||||||||| ||||||| ||  || |||||||| | ||||| || || |||||||    
T  34697357 gggaacaacacttggctagtgtgcatgcctctacgcatgagccggattagtcgcccacttttgatgggttggaaaccgatgcgaaagcc 34697445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 38663630 - 38663686
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggtt 199  Q
    |||| ||| |||||||||||||||| | | || |||||||||| |||||||||||||    
T  38663630 aatgttagtaacacacattttaacacatatttttcaacacactctctttgattggtt 38663686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 3688735 - 3688667
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||    
T  3688735 gagaaatgctaacaacacacattttaatatacactttccaacacactttctttgattggttaaaattca 3688667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 21434033 - 21433964
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    |||| ||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||||| ||||    
T  21434033 aatggtagcaacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacatgg 21433964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 993364 - 993268
Alignment:
Q  136 taagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtcacacatgatgtggtggg 232  Q
    ||||||||||||||||||||||||| |||||| ||||||  ||||| ||| ||||||||| |||  |||||| ||||| | |||||||| |||||||    
T  993364 taagagaaatgctagcaacacacatcttaacacacactttccaacaaactctctttgatttgttagaattcacatgggacccacatgatttggtggg 993268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 16458085 - 16458028
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgat 194  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||    
T  16458085 aagagaaatgctagcaacacacattctaacacacacttttcaacacactctctttgat 16458028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 33413974 - 33414051
Alignment:
Q  135 ataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    ||||||||||||| | ||| ||||||| ||||| |||||| |||||||||| ||||||||||||| ||||||| ||||    
T  33413974 ataagagaaatgccaacaaaacacattgtaacacacacttttcaacacactctctttgattggttaaaattcacatgg 33414051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 41162989 - 41162892
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaat 107  Q
    |||| ||||||| |||| |||||||||||||  ||| ||||||| |||||||||| |||||||||  |||||| ||  ||||||||||| ||||||||    
T  41162989 aataccgagttcgatttccagagggaacaacacttggccagtgtacatgcttctatgcatgagccgaattagtcgcccacctttgatggatcggaaat 41162892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 7403246 - 7403179
Alignment:
Q  140 agaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||| ||||||||||| ||||||||| |||||  |||||||||| ||||||||||||| |||||||    
T  7403246 agaaattctagcaacacatattttaacacacactattcaacacactctctttgattggttaaaattca 7403179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 17080069 - 17080156
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||| ||| |||||| |||||| |||||||||||||| ||||||| ||  ||||||||||| ||| ||| ||||| ||||||    
T  17080069 gggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcacacctttgatggatcgaaaaccggtgcgaaagc 17080156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 7246731 - 7246645
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    |||||||||| ||| |||||| |||||| |||||||||||||| ||||||| ||  ||||||| ||| ||||||| ||||| |||||    
T  7246731 gggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 7246645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 10541019 - 10541128
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    |||||||| |||| |||| ||| || ||||||| ||| ||||||||||||| |||||||| ||||| ||||| | ||  ||||||||||| ||||||| |    
T  10541019 gaatatcgggttcgatttccaggggaaacaacgcttggccagtgtgcatgcctctacgcacgagccagattaatcgc-cacctttgatggatcggaaacc 10541117  T
Q  109 ggtgtgaaagc 119  Q
    |||| ||||||    
T  10541118 ggtgcgaaagc 10541128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 15134727 - 15134657
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    ||||||| ||||||||||||||||  |||||| |||||||||| ||| ||||||||| ||||||| |||||    
T  15134727 aatgctaacaacacacattttaacgcacacttttcaacacactgtctgtgattggttaaaattcacatggg 15134657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 52374896 - 52374965
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    ||||||| ||||||||||||||||| |||||| |||||||||| |||||||| | || ||||||| ||||    
T  52374896 aatgctaacaacacacattttaacacacacttttcaacacactctctttgatagattaaaattcacatgg 52374965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 15134542 - 15134618
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    |||||||||||| |||||| ||||||||| ||| || |||||||| | ||||| ||||||| ||||||| |||||||    
T  15134542 gagaaatgctagtaacacaaattttaacacacatttttcaacacattctcttttattggttaaaattcacatgggtc 15134618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 24166479 - 24166563
Alignment:
Q  35 aacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    ||||||||||| |||||| |||||| |||||||| ||||| |||||||  |  ||||||||||| ||||||| ||||| ||||||    
T  24166479 aacaacgtttggccagtgcgcatgcctctacgcacgagccagattagtcacccacctttgatggatcggaaaccggtgcgaaagc 24166563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 20532518 - 20532419
Alignment:
Q  8 agaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaat 107  Q
    |||||| ||||||| |||| |||  ||||||||| ||| |||||| |||||| |||||||||||||| ||| ||| ||  ||||||| ||| ||||||||    
T  20532518 agaataccgagttcgatttccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggataagtcgcccacctttggtggatcggaaat 20532419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 21433861 - 21433916
Alignment:
Q  152 aacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||||||||||| ||| || |||||||||| ||||||||||||| |||||||    
T  21433861 aacacacattttaacacacatttttcaacacactctctttgattggttaaaattca 21433916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 53599087 - 53599174
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||||||| |||||| |||||| |||||||||||||| ||||| | | | ||||||  ||| ||||||| ||||| |||||||    
T  53599087 ggaacaacgtttggccagtgcgcatgcctctacgcatgagccggattaatcgttcacctttagtggatcggaaaccggtgcgaaagcc 53599174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 16645121 - 16645231
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||| || |||| ||||||||   |||||||| ||| ||||||||||||| ||||| |||||| ||||||||| ||  |||| || ||| ||||||| |    
T  16645121 gaataccgggttcgattttcaggaagaacaacgcttggccagtgtgcatgcctctacacatgagtctgattagtcgcccacctgtggtgggtcggaaacc 16645220  T
Q  109 ggtgtgaaagc 119  Q
    |||| ||||||    
T  16645221 ggtgcgaaagc 16645231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 14567274 - 14567351
Alignment:
Q  41 gtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    ||||| |||||| |||||| |||||||| ||||| ||||||| |||  |||||| ||| ||||||||||||| |||||    
T  14567274 gtttggccagtgcgcatgcctctacgcacgagccggattagtcgctcgcctttggtgggtcggaaatcggtgcgaaag 14567351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 12703646 - 12703542
Alignment:
Q  16 gagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtga 115  Q
    |||||| |||| ||| |||||||||| |||||||||||| |||  ||||||||| |||| ||||||| ||  | |||| | || ||||||| || |||||    
T  12703646 gagttcgatttccagtgggaacaacgcttgaccagtgtgtatgtctctacgcataagccggattagtcgcccatctttaaaggatcggaaaccgatgtga 12703547  T
Q  116 aagcc 120  Q
    |||||    
T  12703546 aagcc 12703542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 41840563 - 41840643
Alignment:
Q  134 gataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggt 214  Q
    |||| |||||||| |||||||| ||||||||||| | | || |||||||||| |||||||||| || ||||| | ||||||    
T  41840563 gatatgagaaatgttagcaacatacattttaacacatatttttcaacacactctctttgattgattaaaatttacatgggt 41840643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 49260750 - 49260670
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    |||||||||| ||| |||||| |||||| |||||||| ||||| ||||||| |   ||||||| ||| |||||||||||||    
T  49260750 gggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgaccacctttggtgggtcggaaatcggtg 49260670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 49952240 - 49952144
Alignment:
Q  23 attttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgc-taacctttgatggttcggaaatcggtgtgaaag 118  Q
    ||||||||| | |||||||||||  ||||| ||| || |||||||||||||| ||||||| || | ||||||||||| | ||||| ||||| |||||    
T  49952240 attttcagaagaaacaacgtttggtcagtgcgcacgcctctacgcatgagccggattagtcgcgtcacctttgatgggttggaaaccggtgcgaaag 49952144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 9023886 - 9023953
Alignment:
Q  140 agaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||| || ||| |||||||||||||||||||| | ||||||| || ||||||||| | |||||||    
T  9023886 agaaatgttaacaatacacattttaacatacactttttaacacacgttttttgattgggtaaaattca 9023953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 31758854 - 31758779
Alignment:
Q  136 taagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatg 211  Q
    ||||||||||||||| |||||||||||||  ||| | || |||||||| | |||||||||| || |||||| ||||    
T  31758854 taagagaaatgctagaaacacacattttagtatatatttttcaacacattctctttgattgattaaaattcttatg 31758779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 40780968 - 40780861
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcg 109  Q
    ||||||| |||| ||| |||  |||||||||| |||  ||||| |||||| |||||||||||||| ||||||| |   ||||||| ||| ||||||| ||    
T  40780968 aatatcgggttcgattctcaaggggaacaacgcttggtcagtgcgcatgcctctacgcatgagccggattagtcgtccacctttggtgggtcggaaaccg 40780869  T
Q  110 gtgtgaaa 117  Q
    ||| ||||    
T  40780868 gtgcgaaa 40780861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 29895813 - 29895899
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    |||||||||  ||| |||||| |||||| |||||||||||||| ||||||| |   ||| ||| ||||||||||| ||||| |||||    
T  29895813 gggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgtccaccattggtggttcggaaaccggtgcgaaag 29895899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 32286392 - 32286322
Alignment:
Q  142 aaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    ||||||||||||||||| ||| |||||| | || |||||||||| | ||| ||||||| ||||||| ||||    
T  32286392 aaatgctagcaacacacgtttcaacatatatttttcaacacactcttttttattggttaaaattcacatgg 32286322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 169
Target Start/End: Original strand, 34397388 - 34397418
Alignment:
Q  139 gagaaatgctagcaacacacattttaacata 169  Q
    |||||||||||||||||||||||||||||||    
T  34397388 gagaaatgctagcaacacacattttaacata 34397418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 48791211 - 48791280
Alignment:
Q  142 aaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    |||||||| ||||||| |||| |||| ||||||  ||||||||| ||||| || |||||||||||||||||    
T  48791211 aaatgctaccaacacatattt-aacacacactttccaacacactctctttaatcggttgaaattcatatgg 48791280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 2324732 - 2324801
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||| |||| || ||||||||||||||||  |||||| |||| | ||| ||||||||||||| |||||||    
T  2324732 agaggaatgataacaacacacattttaacgcacacttttcaatatactctctttgattggttaaaattca 2324801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 13073564 - 13073649
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||||||| ||||| |||||| |||| | ||||||||||| || ||||||| | | ||||||| ||| ||||||| ||||| ||||    
T  13073564 gggaacaatgtttggccagtgcgcatacctctacgcatgaaccagattagtcgtttacctttggtgggtcggaaaccggtgcgaaa 13073649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 28987249 - 28987314
Alignment:
Q  142 aaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||| | ||||| ||||||||||| | || |||||| ||||| ||||||| |||||||||||    
T  28987249 aaatgctatcgacacatattttaacatatatttttcaacatactttttttgatttgttgaaattca 28987314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 30317236 - 30317345
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    |||||||  |||| ||| ||||||||||||||| ||| |||||  | |||| |||||||| |||||  |||||| ||  ||||||| ||| ||||||| |    
T  30317236 gaatatcaggttcgattctcagagggaacaacgcttggccagtacgaatgcctctacgcacgagccgaattagtcgcccacctttggtgggtcggaaacc 30317335  T
Q  109 ggtgtgaaag 118  Q
    | ||||||||    
T  30317336 gatgtgaaag 30317345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 37369128 - 37369091
Alignment:
Q  31 agggaacaacgtttgaccagtgtgcatgcttctacgca 68  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  37369128 agggaacaacgtttgtccagtgtgcatgcctctacgca 37369091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 38036386 - 38036357
Alignment:
Q  138 agagaaatgctagcaacacacattttaaca 167  Q
    ||||||||||||||||||||||||||||||    
T  38036386 agagaaatgctagcaacacacattttaaca 38036357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 42722661 - 42722612
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||||| ||| |||||| |||||| |||||||||||||| |||||||    
T  42722661 ggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagt 42722612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 45653991 - 45654047
Alignment:
Q  142 aaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggtt 199  Q
    |||||||||||||||||||  ||||| |||||| |||||||||| | |||||||||||    
T  45653991 aaatgctagcaacacacatcctaacagacacttttcaacacactct-tttgattggtt 45654047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 15840014 - 15839970
Alignment:
Q  38 aacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||| |||||| |||||| |||||||||||||| |||||||    
T  15840014 aacgtttggccagtgcgcatgcctctacgcatgagccggattagt 15839970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 16450301 - 16450413
Alignment:
Q  7 aagaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaa 106  Q
    |||||||| | |||| |||  ||| |||||||||| ||| ||||||  ||||| |||||||||||||| ||||||| |   ||||||| | | |||||||    
T  16450301 aagaatattgggttcgattcccagggggaacaacgcttggccagtgcacatgcctctacgcatgagccagattagtcgtccacctttggtaggtcggaaa 16450400  T
Q  107 tcggtgtgaaagc 119  Q
     ||||| ||||||    
T  16450401 ccggtgcgaaagc 16450413  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 26362053 - 26361965
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||||||||  |||||||||||| |||||||| ||||| ||||||| ||  ||||||||||| ||||||| |||||||||||||    
T  26362053 gggaacaacgtttggtcagtgtgcatgcctctacgcacgagccggattagtcgcacacctttgatgggtcggaaaccggtgtgaaagcc 26361965  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 36480682 - 36480756
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    ||||||||||| ||||||||||||||||| || |||  ||||||||| ||||||||||||| ||||||| |||||    
T  36480682 gagaaatgctaacaacacacattttaacacaccctttccaacacactctctttgattggttaaaattcacatggg 36480756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 35357288 - 35357352
Alignment:
Q  135 ataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggtt 199  Q
    ||||||||||||||||||||||||||| ||||| | | || |||||||||| |||||||||||||    
T  35357288 ataagagaaatgctagcaacacacattctaacaaatatttttcaacacactctctttgattggtt 35357352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 36007515 - 36007451
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||| ||||||||||||||||||||| ||||| |||||||| ||||||||| ||||| |||||||    
T  36007515 aatgttagcaacacacattttaacattcacttttcaacacattttctttgagtggttaaaattca 36007451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 36480867 - 36480795
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||||||||||||||||||||| |||||| ||||||  || ||||||||||| | ||||||| |||||||    
T  36480867 aatgctagcaacacacattttaacacacacttttcaacattctctctttgattggctaaaattcacatgggtc 36480795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 3901659 - 3901581
Alignment:
Q  136 taagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    |||||| ||||||| ||||| |||||| |||| |||||| |||||||||| ||||||||||||| ||||||| |||||||    
T  3901659 taagaggaatgctaacaacatacattt-aacacacacttttcaacacactctctttgattggttaaaattcacatgggtc 3901581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 19554359 - 19554437
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||||||||| ||||||||||| |||||  |||| ||||| ||||  |||||||||| || |||||||||||||||    
T  19554359 aagagaaatgctaacaacacacattctaacacgcactggtcaatacaccctctttgattgattaaaattcatatgggtc 19554437  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 19560602 - 19560680
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||| ||||||| ||||| ||||| ||||  |||||| |||| |||||  ||||||||||||||||||||||||||||    
T  19560602 aagaggaatgctaacaacatacattctaacgcacacttttcaatacactcgctttgattggttgaaattcatatgggtc 19560680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 33251683 - 33251733
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  33251683 gggaacaacgtttggccagtgtgcatgcctctacgcatgagccggattagt 33251733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 1458697 - 1458628
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    ||||||| ||||||||||| ||||| |||||| |||||||||| |  |||||||||| ||||||||||||    
T  1458697 aatgctaacaacacacattctaacaaacacttttcaacacactcttcttgattggtttaaattcatatgg 1458628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 14345126 - 14345191
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaat 204  Q
    |||||||| |||||||||| ||||||||| | | || |||||||||||||||||||||||| ||||    
T  14345126 gagaaatgttagcaacacatattttaacacatatttttcaacacactttctttgattggttaaaat 14345191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 30767356 - 30767259
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaa 106  Q
    |||||||| |||| |||| ||| |||||||||  ||| ||||||||||||| |||||||| ||||| ||||||| ||  ||||||| ||| |||||||    
T  30767356 gaatatcgggttcgatttccagggggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcggaaa 30767259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 3507622 - 3507534
Alignment:
Q  29 agagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    ||||||||||||  ||| |||||| |||||| |||||||| ||||| ||||||| ||| ||||||| ||| ||||||| ||||| ||||    
T  3507622 agagggaacaacacttggccagtgcgcatgcctctacgcacgagccggattagtcgctcacctttggtgggtcggaaaccggtgcgaaa 3507534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 29955010 - 29955089
Alignment:
Q  136 taagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    |||||| || |||||||||| | ||||||| | | |||| |||||||||||| ||||||||||| ||||||| |||||||    
T  29955010 taagaggaaagctagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtc 29955089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 30004164 - 30004243
Alignment:
Q  136 taagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    |||||| || |||||||||| | ||||||| | | |||| |||||||||||| ||||||||||| ||||||| |||||||    
T  30004164 taagaggaaagctagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtc 30004243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 1458514 - 1458605
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtcacacatgatgtggtgg 231  Q
    |||||||||  |||||| || ||| ||||| ||| || ||||||||||  |||||||||||||||||||||||| | | |||||||| ||||||    
T  1458514 agagaaatgtcagcaacgcatattctaacacacaattttcaacacact--ctttgattggttgaaattcatatgagacccacatgatttggtgg 1458605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 7648753 - 7648811
Alignment:
Q  24 ttttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||| ||||||||||||||||||||| |||| | |||||||| ||||| |||||||    
T  7648753 ttttcagggggaacaacgtttgaccagtgcgcatacctctacgcacgagccggattagt 7648811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 26207887 - 26207837
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||||| ||| ||||||||||||| |||||||||||||| |||||||    
T  26207887 gggaacaacgcttgtccagtgtgcatgcctctacgcatgagccggattagt 26207837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 3755592 - 3755641
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||||||||||||||| |||||  |||||||||||||| |||||||    
T  3755592 ggaacaacgtttgaccagtgcgcatgtctctacgcatgagccggattagt 3755641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 37189301 - 37189240
Alignment:
Q  146 gctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||||||||||||||| ||||| || | |||| ||| ||||||||||||| |||||||    
T  37189301 gctagcaacacacattttaatatacattttttaacagactctctttgattggttaaaattca 37189240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 39849093 - 39849142
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||||| ||| ||||||||||||| |||||||||||||| |||||||    
T  39849093 ggaacaacgcttggccagtgtgcatgcctctacgcatgagccggattagt 39849142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 47219168 - 47219253
Alignment:
Q  35 aacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||| ||| | |||| |||||| |||||||||||||| ||||||| |   ||||||||||| ||||||| ||||| |||||||    
T  47219168 aacaacgcttggctagtgcgcatgcctctacgcatgagccggattagtcgtccacctttgatgggtcggaaaccggtgcgaaagcc 47219253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 54261248 - 54261333
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    ||||||||| ||| |||||| |||||| |||||||||||||| ||||||| | | ||||||  ||| ||||||| ||||| |||||    
T  54261248 ggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccggtgcgaaag 54261333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 55069766 - 55069685
Alignment:
Q  31 agggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    ||||||||||||||| ||||||  ||||| |||||||| ||||| ||||| | ||| ||||||| ||| ||||||| |||||    
T  55069766 agggaacaacgtttggccagtgcacatgcctctacgcacgagccggattaatcgctcacctttggtgggtcggaaaccggtg 55069685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 8164574 - 8164662
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||| ||| |||||| |||||| | |||||| ||| | ||||||| ||  ||||||| ||| ||||||||||| |||||||||    
T  8164574 gggaacaacgcttggccagtgcgcatgcctttacgcacgagtcggattagtcgcccacctttggtggatcggaaatcggcgtgaaagcc 8164662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 26986272 - 26986344
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    |||| |||||||||| ||||||||||| |||| |||||||| | || |||||| ||| ||||||| |||||||    
T  26986272 aatgttagcaacacatattttaacatatacttttcaacacattctccttgattagttaaaattcacatgggtc 26986344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 41630598 - 41630510
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||| ||| |||||| |||||| ||||| |||||||| ||||||| ||  ||||||| | | |||||||  ||||||||||||    
T  41630598 gggaacaacgcttgcccagtgcgcatgcctctacacatgagccggattagtcgcccacctttggttggtcggaaactggtgtgaaagcc 41630510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 15320208 - 15320295
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||| | ||| ||||||||||||| |||||||| ||||| ||||||| ||  ||||||| ||| || |||| ||||| |||||||    
T  15320208 ggaacaatgattggccagtgtgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaagcc 15320295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 23511588 - 23511675
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||| |||||||||||||||| |||||| |||||||||||| | ||||| | |   ||||||||||| ||| ||| ||||| ||||||    
T  23511588 gggagcaacgtttgaccagtgcgcatgcctctacgcatgagtcggattaatcgtccacctttgatgggtcgaaaaccggtgcgaaagc 23511675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 29127917 - 29128028
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    |||||||| |||| |||| ||| | |||||||  |||  ||||| |||||| |||||||||||||| ||||||| ||  ||||||| ||| ||||||| |    
T  29127917 gaatatcgggttcgatttccagggagaacaacacttggtcagtgcgcatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaacc 29128016  T
Q  109 ggtgtgaaagcc 120  Q
    | || |||||||    
T  29128017 gatgcgaaagcc 29128028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 24506747 - 24506654
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    |||| |||||||| || ||||||| ||||||||||  ||||| |||||||||||| | ||||||| ||| ||| ||| ||| ||||||| |||||    
T  24506747 gttcgattttcag-ggaaacaacgcttgaccagtgcacatgcctctacgcatgagtcagattagtcgctcaccattggtgggtcggaaaccggtg 24506654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 32880972 - 32881053
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtcacaca 220  Q
    |||||||||||  ||||||||||||| || ||| || |||||| ||| || |||||||||| | ||||| ||||||| ||||    
T  32880972 gagaaatgctaagaacacacattttatcacacatttttcaacatactctccttgattggttaatattcacatgggtcccaca 32881053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 45877452 - 45877561
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||| || |||| |||| ||| || ||||||  ||| ||||||  ||||| |||||||||||||| ||||||| | | ||| ||||||| ||||||| |    
T  45877452 gaataccgggttcgatttccaggggaaacaacacttggccagtgcacatgcctctacgcatgagccggattagtcgttcaccattgatgggtcggaaacc 45877551  T
Q  109 ggtgtgaaag 118  Q
    |||| |||||    
T  45877552 ggtgcgaaag 45877561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 49543517 - 49543582
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcc 74  Q
    |||||||| |||| ||| |||  ||||||||||||||  |||||||||||| |||||||| |||||    
T  49543517 gaatatcgggttcgattctcatggggaacaacgtttggtcagtgtgcatgcctctacgcacgagcc 49543582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 6462435 - 6462483
Alignment:
Q  34 gaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||| ||| |||||| |||||| |||||||||||||| |||||||    
T  6462435 gaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagt 6462483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 26043835 - 26043895
Alignment:
Q  34 gaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttg 94  Q
    |||||||  ||| |||||| |||||| |||||||||||||| ||||||| ||| |||||||    
T  26043835 gaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcacctttg 26043895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 31205348 - 31205420
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||| |||||||| |||||||| | | ||  ||||||||| ||||||||||||| ||||| | |||||||    
T  31205348 aatgctaacaacacacgttttaacacatattttccaacacactctctttgattggttaaaatttacatgggtc 31205420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 35415135 - 35415091
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaaca 181  Q
    ||||| ||||||| ||||||||||||||||| |||||| ||||||    
T  35415135 aagagtaatgctaacaacacacattttaacacacacttttcaaca 35415091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Complemental strand, 37341414 - 37341386
Alignment:
Q  139 gagaaatgctagcaacacacattttaaca 167  Q
    |||||||||||||||||||||||||||||    
T  37341414 gagaaatgctagcaacacacattttaaca 37341386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 53649777 - 53649833
Alignment:
Q  61 tctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||||||||||||| ||||||| | | ||||||||||| ||||||| ||||| ||||    
T  53649777 tctacgcatgagccggattagtcgttcacctttgatggatcggaaaccggtgcgaaa 53649833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 12275900 - 12275826
Alignment:
Q  141 gaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||||||||||||||||| ||||| ||||||  ||||||||| |||| |||||||| |||||||||||||||    
T  12275900 gaaatgctagcaacacacattctaacacacactttccaacacactctcttcgattggttaaaattcatatgggtc 12275826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 38578975 - 38578866
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    |||||||| |||| |||  ||| |||||||||| ||| |||||| |||||| |||||||||||||| ||||||| ||  ||||||| ||| ||||||| |    
T  38578975 gaatatcgggttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccacctttggtgggtcggaaacc 38578876  T
Q  109 ggtgtgaaag 118  Q
    |||| |||||    
T  38578875 ggtgcgaaag 38578866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 3235534 - 3235602
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||||||| ||||||||||||||||| ||||||  ||| ||||| ||||||||||||| |||||||    
T  3235534 gagaaatgctaacaacacacattttaacacacactttccaatacactctctttgattggttaaaattca 3235602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 5443689 - 5443625
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||||||||||||||| ||||| ||| || |||||| ||||||||||||||||| |||||||    
T  5443689 aatgctagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattca 5443625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 5452734 - 5452670
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||||||||||||||| ||||| ||| || |||||| ||||||||||||||||| |||||||    
T  5452734 aatgctagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattca 5452670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 40134554 - 40134474
Alignment:
Q  133 ggataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||||| |||||||||||| |||||||||||| ||||||  ||||||||  ||| ||||||||| ||||||| |||||||    
T  40134554 ggataagaggaatgctagcaacccacattttaacacacactttccaacacac--tctctgattggttaaaattcacatgggtc 40134474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 26863079 - 26863001
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||| ||||||||||||||||||||||| | |||||| ||| || ||| ||||| ||||||| ||||||| |||||||    
T  26863079 aagaggaatgctagcaacacacattttaatacacacttttcatcaaactctctttaattggttaaaattcacatgggtc 26863001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 22973968 - 22974041
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||| || |||| ||| |||| |||||||||| ||| ||||||||||||| |||||||||||||| |||||||    
T  22973968 gaataccgggttcgattctcagggggaacaacgcttggccagtgtgcatgcgtctacgcatgagccagattagt 22974041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 49107066 - 49107001
Alignment:
Q  142 aaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||| ||||| ||||| ||||| |||||| |||||||||| ||||||||||||| |||||||    
T  49107066 aaatgctaccaacatacattctaacacacacttttcaacacactctctttgattggttaaaattca 49107001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 13095882 - 13095962
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    |||||||||  ||| |||||| |||||| |||||||||||||| ||||||| ||| ||||||| ||| ||||||| |||||    
T  13095882 gggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcacctttggtgggtcggaaaccggtg 13095962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 43862057 - 43861969
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||||||| |||||| |||||| |||||||||||||| |||||||   | ||||||| ||| ||| ||| ||||| |||||||    
T  43862057 gggaacaacgtttggccagtgcgcatgcctctacgcatgagccggattagtcattcacctttggtggatcgaaaaccggtgcgaaagcc 43861969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 22573814 - 22573884
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgatta 80  Q
    |||||||| |||| |||||||| ||||||||| ||||||||||| |||||| | |||||||||||| |||||    
T  22573814 gaatatcgggttcgattttcag-gggaacaacatttgaccagtgcgcatgcctttacgcatgagccggatta 22573884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 22993451 - 22993364
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||| ||| ||||||||||||| |||||||| || || ||||||| ||| ||||||| ||| || |||| ||||| |||||||    
T  22993451 ggaacaacgcttggccagtgtgcatgcctctacgcacgaaccggattagtcgctcacctttggtgggtcagaaaccggtgcgaaagcc 22993364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 10056788 - 10056711
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    |||| ||||||| ||||||||||| |||||  ||||| |||||||||| ||||| ||| ||| |||| ||||||||||    
T  10056788 agaggaatgctaacaacacacattctaacacgcacttttcaacacactctctttaattagttaaaatccatatgggtc 10056711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 23658180 - 23658253
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||| ||||| |||| ||| |||||||||| ||| ||||||||||||| ||||| || ||||| |||||||    
T  23658180 gaatatccagttcgatttccagggggaacaacgcttggccagtgtgcatgcctctacacacgagccggattagt 23658253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 2276256 - 2276325
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    |||||||| |||||||||||    ||||| |||||| |||||||||| ||||||||||||| ||||||| ||||    
T  2276256 gagaaatgttagcaacacac----taacacacacttttcaacacactctctttgattggttaaaattcacatgg 2276325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 45960072 - 45960008
Alignment:
Q  48 cagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    ||||| |||||| ||||||||| |||| ||||||| ||| ||||||||||| ||||||| |||||    
T  45960072 cagtgcgcatgcctctacgcataagccggattagtcgctcacctttgatggatcggaaaccggtg 45960008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 49142754 - 49142666
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||| ||  ||||||  ||||| |||||||| ||||| ||||||||||  ||||||||||| ||| |||| |||| |||||||    
T  49142754 gggaacaacgcttagccagtgcacatgcctctacgcacgagccggattagttgcccacctttgatgggtcgaaaattggtgcgaaagcc 49142666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 4228838 - 4228759
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    ||||||||||||| ||||||  |||||  ||||||||||||| ||||||| ||  ||| ||||||| ||| |||||||||    
T  4228838 ggaacaacgtttggccagtgcacatgcccctacgcatgagccggattagtcgcccaccattgatgggtcgaaaatcggtg 4228759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 31042115 - 31042182
Alignment:
Q  140 agaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||  ||||||||| ||||||||| |||||| |||| ||| | ||||||||||||| |||||||    
T  31042115 agaaatggcagcaacacatattttaacacacacttttcaatacattatctttgattggttaaaattca 31042182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 41268038 - 41267935
Alignment:
Q  4 tcgaagaatatcgagttcaattttcagagg-gaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcg 102  Q
    |||||||||||||||||| ||||| || || ||| |||| ||||  ||||||||||| ||||||||||||   ||||||| |   ||||||||||| |||    
T  41268038 tcgaagaatatcgagttcgatttttaggggagaataacgcttgattagtgtgcatgcctctacgcatgagttagattagtcgtccacctttgatgggtcg 41267939  T
Q  103 gaaa 106  Q
    ||||    
T  41267938 gaaa 41267935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 43925552 - 43925623
Alignment:
Q  48 cagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    ||||| |||||| |||||||||||||  ||||||||| | ||||||||||| || |||| || |||||||||    
T  43925552 cagtgcgcatgcctctacgcatgagctggattagttgtttacctttgatggatcagaaaccgatgtgaaagc 43925623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 26647856 - 26647794
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggtt 199  Q
    ||||| ||||||||||||| ||||| ||| | |||||| |||||||||| | |||||||||||    
T  26647856 aagaggaatgctagcaacatacattctaatacacacttttcaacacactatttttgattggtt 26647794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 36619339 - 36619289
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||||  ||| ||||||||||||| |||||||||||||| |||||||    
T  36619339 gggaacaacacttgtccagtgtgcatgcctctacgcatgagccggattagt 36619289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 42032120 - 42032194
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaa 106  Q
    |||||||||||||| ||||||  ||| | ||||||||||||||  ||||||||   ||||||||||| |||||||    
T  42032120 gggaacaacgtttggccagtgcacatacatctacgcatgagccgaattagttgtccacctttgatgggtcggaaa 42032194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 48551883 - 48551969
Alignment:
Q  34 gaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||| ||| ||| || |||||| |||||| ||||||| ||||||| |   ||||||||||| ||||||| ||||| |||||||    
T  48551883 gaacaacggttggccaatgcgcatgcctctacgtatgagccggattagtcgtccacctttgatggatcggaaaccggtgcgaaagcc 48551969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 365165 - 365214
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||||| || | ||||| |||||| ||||||||||||||||||||||    
T  365165 ggaacaacgcttaatcagtgcgcatgcctctacgcatgagcctgattagt 365214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 31042460 - 31042407
Alignment:
Q  146 gctagcaacacacattttaacatacacttgtcaacacactttctttgattggtt 199  Q
    |||||||||||| |||||||||||||||| | || | ||| |||||||||||||    
T  31042460 gctagcaacacatattttaacatacactttttaatatactctctttgattggtt 31042407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 39420860 - 39420941
Alignment:
Q  31 agggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    ||||||||||| ||| |||||| || ||| |||||||||||||| ||||||| |   |||||||||||  |||||| |||||    
T  39420860 agggaacaacgcttggccagtgcgcgtgcctctacgcatgagccggattagtcgtctacctttgatgggccggaaaccggtg 39420941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 316525 - 316465
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattgg 197  Q
    ||||||||||||||  |||| |||||||||| ||| || |||||||| | |||||||||||    
T  316525 aagagaaatgctagttacacgcattttaacacacatttttcaacacattctctttgattgg 316465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 4195310 - 4195238
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattag 81  Q
    ||||| ||||||| |||| |||  |||||||| |||| | |||| |||||| |||||||||||||| ||||||    
T  4195310 gaataccgagttcgatttccaggaggaacaacatttggctagtgcgcatgcctctacgcatgagccggattag 4195238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 12275714 - 12275787
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    |||||||||||||||||||||||| ||||  ||||||  ||||||||| ||||  ||||||| ||| ||| |||||    
T  12275714 agagaaatgctagcaacacacattctaac--acactttccaacacactctcttcaattggttaaaaatcacatggg 12275787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 14650317 - 14650429
Alignment:
Q  8 agaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaat 107  Q
    ||||||||| |||| |||| |||  ||||||| | ||||||||||   |||| |||||||||||||| | ||||| ||| ||||||| ||| | | |||     
T  14650317 agaatatcgggttcgatttccaggaggaacaatgcttgaccagtgcatatgcctctacgcatgagccgggttagtcgctcacctttggtgggttgaaaac 14650416  T
Q  108 cggtgtgaaagcc 120  Q
    ||||| |||||||    
T  14650417 cggtgcgaaagcc 14650429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 37514931 - 37515031
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||| |||||||| ||||||||||||||  ||||| |||||  |||||||| ||||| ||||| | | | ||| ||  ||| ||||||| ||||||||||    
T  37514931 gttcgattttcagtgggaacaacgtttggtcagtgcgcatgtctctacgcacgagccggattaatcgttcaccattagtgggtcggaaaccggtgtgaaa 37515030  T
Q  118 g 118  Q
    |    
T  37515031 g 37515031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 47341877 - 47341989
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||| ||||||| |||  ||| |||||||||  ||| |||||| |||||| |||||||| ||||  |||| || | | ||| ||| ||| |||||||||    
T  47341877 gaataccgagttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcacgagcaggattggtcgttcaccattggtgggtcggaaatc 47341976  T
Q  109 ggtgtgaaagccg 121  Q
    |||| ||||||||    
T  47341977 ggtgcgaaagccg 47341989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 47497864 - 47497796
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||| ||| ||||||||||| ||||| ||| || |||| | | ||||||||||||||| |||||||    
T  47497864 gagaaattctaacaacacacattctaacacacatttttcaatatattttctttgattggttaaaattca 47497796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 48244441 - 48244353
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||| | |||| ||||| |  ||| |||||||||||||| ||||||| ||| ||||||| ||| ||| ||| ||||| |||||||    
T  48244441 gggaacaatgcttgatcagtgcgtttgcctctacgcatgagccggattagtcgctcacctttggtggatcgaaaaccggtgcgaaagcc 48244353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 24671955 - 24671865
Alignment:
Q  28 cagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    |||||||||||||  ||||||||||||||||| ||||||||  |||| ||||||| |    ||||||||||||||||||||||||||||||    
T  24671955 cagagggaacaacacttgaccagtgtgcatgcctctacgcacaagccggattagtagtccgcctttgatggttcggaaatcggtgtgaaag 24671865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 1473594 - 1473665
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggt 214  Q
    ||||||||||||||||||||||| | ||| || |||||||||| ||||||||||||| ||||||| ||||||    
T  1473594 aatgctagcaacacacattttaatacacatttttcaacacactatctttgattggttaaaattcacatgggt 1473665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 8612058 - 8611971
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||| ||||||||||||||||||||||||||||| || ||||||| ||  ||||||| ||| || |||| ||||| |||||||    
T  8612058 ggaacaacgcttgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaagcc 8611971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 24110039 - 24110110
Alignment:
Q  140 agaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatg 211  Q
    |||||||||||||||||| ||| ||| ||||| || |||||||||| ||||||||||||| |||||||||||    
T  24110039 agaaatgctagcaacacatattctaaaatacatttttcaacacactctctttgattggttaaaattcatatg 24110110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 17390061 - 17389993
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||||||||||||||||||||||||  || || ||||||| || ||||||||||||| |||||||    
T  17390061 gagaaatgctagcaacacacattttaacacgcaattttcaacactctctctttgattggttaaaattca 17389993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 5706784 - 5706717
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaatt 205  Q
    ||||||||| |||||||||||||||||||| | |||| |||||||||| |||||||||| || |||||    
T  5706784 agagaaatgatagcaacacacattttaacacatacttttcaacacactctctttgattgattaaaatt 5706717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 4483343 - 4483417
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||| ||||||||| |||||||||||||||||| |||  ||||| ||||||||||||| ||||| ||| |||||    
T  4483343 gagaaatactagcaacatacattttaacatacacttttca--acactctctttgattggttaaaattaatacgggtc 4483417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 10730025 - 10729951
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    |||||||||||| |||||||||||||||  |||||| ||||||| || |||||||| |||| |||||||||| ||||    
T  10730025 gagaaatgctagaaacacacattttaac--acacttttcaacacgctctctttgatcggttaaaattcatataggtc 10729951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 13036112 - 13036039
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||| |||| |||||||| |||||||||  ||| |||||| |||||| |||||||||||||| |||||||    
T  13036112 gaatatcgggttcgattttcagggggaacaacacttggccagtgcgcatgcctctacgcatgagccagattagt 13036039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 4032960 - 4033035
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacac--ttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    |||||||| |||||||||| ||||||||||| ||  || |||||||||| ||||| ||||||||||||| ||||||    
T  4032960 gagaaatgttagcaacacatattttaacataaacatttttcaacacactctctttaattggttgaaatttatatgg 4033035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 4033144 - 4033088
Alignment:
Q  151 caacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||||||||||||| |||||| |||| ||||| ||||||||||||| |||||||    
T  4033144 caacacacattttaacacacacttttcaatacactatctttgattggttaaaattca 4033088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 21898674 - 21898761
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||| ||| |||||| |||||| |||||||||||||| ||||||| | | ||||||  ||| ||||||| ||||| |||||||    
T  21898674 ggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccggtgcgaaagcc 21898761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 30788937 - 30788850
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||||||| |||||| |||||| |||| ||| ||||| ||||||| ||  ||||||| ||| ||||||| ||||| |||||||    
T  30788937 ggaacaacgtttggccagtgcgcatgcctctaggcacgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaagcc 30788850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 4494370 - 4494437
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||| |||||||||| |||||||| |||||  || || |||||||||||||||||||||||| |||||||    
T  4494370 agaggaatgctagcagcacacattctaaca--catttttcaacacactttctttgattggttaaaattca 4494437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 11142606 - 11142680
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttg 84  Q
    |||| ||||||| |||  ||| || |||||||||||||||||| |||||| |||||||||||| | |||||||||    
T  11142606 aataccgagttcgattcgcagtggaaacaacgtttgaccagtgcgcatgcctctacgcatgagtcagattagttg 11142680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 479781 - 479846
Alignment:
Q  142 aaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||||||||||| ||||||| | ||| || |||| ||||||| ||||||||||| |||||||    
T  479781 aaatgctagcaacacaaattttaataaacatttttcaaaacactttatttgattggttaaaattca 479846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 28865553 - 28865461
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtcacacatgatgtggtggg 232  Q
    ||||||||||||||||||||||| |||||  || || ||||||| || ||||||||||||| ||| ||| ||||| | |||||||  |||||||    
T  28865553 gagaaatgctagcaacacacattgtaacacgca-ttttcaacacgctctctttgattggttaaaactcacatgggacccacatgaattggtggg 28865461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 32157275 - 32157202
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||  ||| |||||| ||||||||||||  |||||||||| |||| | |||||||||||||| |||||||    
T  32157275 gaatatcaggtttaatttttagagggaacaacacttgaccagtgcgcatacctctacgcatgagccagattagt 32157202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 12731529 - 12731597
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||||| |||||||||| ||| ||| | |||||| |||||||| | ||||||||||||| |||||||    
T  12731529 gagaaatgttagcaacacatattctaatacacacttctcaacacattctctttgattggttaaaattca 12731597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 29444850 - 29444798
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttg 84  Q
    |||||||||| ||| |||||| |||||| |||||||||||||| |||||||||    
T  29444850 gggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagttg 29444798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 34954718 - 34954630
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaa 106  Q
    |||| ||| |||| |||||||||||||| ||||||  ||| | |||||||||||||| ||||||| |   ||||||||||| |||||||    
T  34954718 gttcgattctcagggggaacaacgtttggccagtgcacatacctctacgcatgagccagattagtcgtccacctttgatgggtcggaaa 34954630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 479968 - 479933
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacac 172  Q
    ||||| ||||||||||||||||||||||||||||||    
T  479968 aagaggaatgctagcaacacacattttaacatacac 479933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 4483530 - 4483475
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgat 194  Q
    ||||||| |||||||||||||||||||||  ||||| ||||||| || ||||||||    
T  4483530 gagaaatactagcaacacacattttaacacgcacttttcaacacgctctctttgat 4483475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 4485779 - 4485736
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaac 180  Q
    ||||| ||||||||| |||||||||||||||||||||| |||||    
T  4485779 aagaggaatgctagctacacacattttaacatacacttttcaac 4485736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 5253308 - 5253221
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||  ||| |||||| |||||| |||||||||||||| ||||| | ||  ||||||| ||| ||||||| ||||| ||||||    
T  5253308 gggaacaacacttggccagtgcgcatgcctctacgcatgagccggattaatcgcccacctttggtgggtcggaaaccggtgcgaaagc 5253221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 6606205 - 6606094
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||| || |||| ||| |||| |||||||||  ||| ||||||| ||||| |||||||||||||| ||||||| |   ||| ||| ||| ||||||| |    
T  6606205 gaataccgggttcgattctcagggggaacaacacttggccagtgtacatgcctctacgcatgagccggattagtcgtccaccattggtgggtcggaaacc 6606106  T
Q  109 ggtgtgaaagcc 120  Q
    |||| |||||||    
T  6606105 ggtgcgaaagcc 6606094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 8932663 - 8932774
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    |||||||| |||| |||  ||| |||||||||  ||| | |||| |||||| |||||||||||||| ||||| |  |  ||||||||||| ||||||| |    
T  8932663 gaatatcgggttcgattcccagggggaacaacacttggctagtgcgcatgcctctacgcatgagccggattaatcacccacctttgatgggtcggaaacc 8932762  T
Q  109 ggtgtgaaagcc 120  Q
    |||| |||||||    
T  8932763 ggtgcgaaagcc 8932774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 8944129 - 8944240
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    |||||||| |||| |||  ||| |||||||||  ||| | |||| |||||| |||||||||||||| ||||| |  |  ||||||||||| ||||||| |    
T  8944129 gaatatcgggttcgattcccagggggaacaacacttggctagtgcgcatgcctctacgcatgagccggattaatcacccacctttgatgggtcggaaacc 8944228  T
Q  109 ggtgtgaaagcc 120  Q
    |||| |||||||    
T  8944229 ggtgcgaaagcc 8944240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 12606446 - 12606505
Alignment:
Q  23 attttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||| ||| |||||||||||||| |||||| |||||| |||||||| ||||| |||||||    
T  12606446 atttccagggggaacaacgtttggccagtgcgcatgcctctacgcacgagccggattagt 12606505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 17114981 - 17114902
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtg 112  Q
    ||||||||| ||| ||| ||  ||||| |||||||||||||| ||||||| ||  ||||||||| | |||||||||||||    
T  17114981 ggaacaacgcttggccaatggacatgcctctacgcatgagccggattagtcgcccacctttgataggtcggaaatcggtg 17114902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 24691967 - 24691920
Alignment:
Q  140 agaaatgctagcaacacacattttaacatacacttgtcaacacacttt 187  Q
    ||||||| |||||||||||||||||||| ||||||  |||||||||||    
T  24691967 agaaatgttagcaacacacattttaacacacactttccaacacacttt 24691920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 31946984 - 31946937
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacac 184  Q
    ||||| ||||||||||||||||||| ||||| |||||| |||||||||    
T  31946984 aagaggaatgctagcaacacacattctaacacacacttttcaacacac 31946937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 28865383 - 28865461
Alignment:
Q  137 aagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||| ||||||| ||||||| ||| ||||||||||||   |||| ||||| ||| ||||||| ||||||| |||||||    
T  28865383 aagaggaatgctaacaacacatattgtaacatacactttctaacatacttttttttattggttaaaattcacatgggtc 28865461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 29333224 - 29333182
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcc 74  Q
    |||||||||||||| |||||| |||||| ||||||||||||||    
T  29333224 gggaacaacgtttggccagtgcgcatgcctctacgcatgagcc 29333182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 4787874 - 4787821
Alignment:
Q  146 gctagcaacacacattttaacatacacttgtcaacacactttctttgattggtt 199  Q
    |||||||||||||||||||||||||| || | ||||  || |||||||||||||    
T  4787874 gctagcaacacacattttaacatacattttttaacagtctctctttgattggtt 4787821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 8938737 - 8938822
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    ||||||||  |||||||||| ||| || ||||||||||||||  |||||| |   ||||||||||| ||||||| ||||| |||||    
T  8938737 ggaacaacacttgaccagtgcgcaagcatctacgcatgagccgaattagtcgtccacctttgatgggtcggaaaccggtgcgaaag 8938822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 14107442 - 14107393
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||||||| ||||||||||  ||||| |||||||||||||| |||||||    
T  14107442 ggaacaacgcttgaccagtgcacatgcctctacgcatgagccggattagt 14107393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 31129189 - 31129289
Alignment:
Q  19 ttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    |||||||  ||| |||| ||||| ||| | |||| |||||| |||||||||||||| |||||||||   ||||||| ||  ||||||| ||||| |||||    
T  31129189 ttcaattcacagggggagcaacgcttggctagtgcgcatgcctctacgcatgagccagattagttgtgcacctttggtgagtcggaaaccggtgcgaaag 31129288  T
Q  119 c 119  Q
    |    
T  31129289 c 31129289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 25666965 - 25666907
Alignment:
Q  136 taagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgat 194  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||    
T  25666965 taagagaaatgctagcaacacacattttaacatacaattttcaacacactctctttgat 25666907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 42094362 - 42094293
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgg 212  Q
    ||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||| ||||||| ||||    
T  42094362 aatgctagcaacacacattttaacacacacttttcaacacacactctttgattggttaaaattcacatgg 42094293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 39201621 - 39201513
Alignment:
Q  4 tcgaagaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcgg 103  Q
    |||| ||||| ||| ||| ||| |||| |||||||| ||||| ||||||||||||| |||||||||||||| ||||||| | | ||||||| ||| ||||    
T  39201621 tcgaggaataccgaattcgattctcagggggaacaatgtttggccagtgtgcatgcctctacgcatgagccggattagtcgttcacctttggtgggtcgg 39201522  T
Q  104 aaatcggtg 112  Q
    ||| |||||    
T  39201521 aaaccggtg 39201513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 7747296 - 7747383
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||||||| | | ||||||  ||| ||||||| ||||| |||||||    
T  7747296 ggaacaacgtttggccagtgtgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccggtgcgaaagcc 7747383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 35715141 - 35715071
Alignment:
Q  135 ataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaatt 205  Q
    ||||||||||||| ||||||||||||||||| | |||||| |||| ||||| ||||||||||||| |||||    
T  35715141 ataagagaaatgccagcaacacacattttaagacacacttttcaatacactctctttgattggttaaaatt 35715071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 44773287 - 44773370
Alignment:
Q  35 aacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    ||||||||||| ||||||||||||| |||  || |||||| ||||||| ||| ||||||||||| ||||||| ||||| |||||    
T  44773287 aacaacgtttggccagtgtgcatgcctctgtgcgtgagccggattagtcgctcacctttgatgggtcggaaaccggtgcgaaag 44773370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 15194516 - 15194586
Alignment:
Q  145 tgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||||||||| |||||||||||||||| ||| |||||| | ||||||||||| ||| ||| |||||||    
T  15194516 tgctagcaacacaaattttaacatacacttttcagcacactctttttgattggttaaaagtcacatgggtc 15194586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 10026715 - 10026614
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||| ||| |||| |||||||||||||| |||||| |||||| |||||||||||||| ||||||| |   ||||||| ||| |||||||   ||||||||    
T  10026715 gttcgattctcagggggaacaacgtttggccagtgcgcatgcctctacgcatgagccggattagtcgaccacctttggtgggtcggaaactagtgtgaaa 10026616  T
Q  118 gc 119  Q
    ||    
T  10026615 gc 10026614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 12703640 - 12703567
Alignment:
Q  135 ataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcat 208  Q
    |||||||||||||||| |||| | ||||||| ||||| || |||||||| ||||||||||| ||| ||||||||    
T  12703640 ataagagaaatgctagtaacatatattttaatatacatttttcaacacattttctttgattagttaaaattcat 12703567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 16034935 - 16035044
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||| || |||| ||||||||  ||||||||| ||||||||||||||||| | |||| | ||||| ||||||| ||| ||| ||||||  ||||||| |    
T  16034935 gaataccgggttcgattttcaggcggaacaacgcttgaccagtgtgcatgcctatacgtacgagccggattagtcgctcaccattgatgagtcggaaacc 16035034  T
Q  109 ggtgtgaaag 118  Q
    |||| |||||    
T  16035035 ggtgcgaaag 16035044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 33069145 - 33069210
Alignment:
Q  142 aaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||| |||||||||||||| || || |||||| ||||||||||||||||||| |||| |||||||    
T  33069145 aaatgttagcaacacacattctatcacacacttttcaacacactttctttgatcggttaaaattca 33069210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 34346377 - 34346284
Alignment:
Q  27 tcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||| |||||||||  ||| ||||||||||||| |||||||||||| | ||||| | ||| ||||||| ||| ||||||| ||||| |||||||    
T  34346377 tcagggggaacaacacttggccagtgtgcatgcctctacgcatgagtcagattaatcgctcacctttggtgggtcggaaaccggtgcgaaagcc 34346284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 3466547 - 3466476
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatgggt 214  Q
    ||||||||||||||||||||||||| ||||||   |||| | | ||||||||||||| ||||||| ||||||    
T  3466547 aatgctagcaacacacattttaacacacactttcaaacatagtctctttgattggttaaaattcacatgggt 3466476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 12703456 - 12703507
Alignment:
Q  148 tagcaacacacattttaacatacacttgtcaacacactttctttgattggtt 199  Q
    |||||||||||||||||||| ||| || |||| |||||||||||||||||||    
T  12703456 tagcaacacacattttaacacacatttttcaatacactttctttgattggtt 12703507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 331522 - 331610
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    |||||||||  ||| |||||| ||||||||||||||||||||| ||||||| ||  ||||||| ||| | ||||| | || ||||||||    
T  331522 gggaacaacacttggccagtgcgcatgcttctacgcatgagccggattagtcgcccacctttggtgggttggaaaccagtatgaaagcc 331610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 16209539 - 16209471
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||||||||||||||| ||| |||||||||||| ||||| || | ||||||||  ||| |||||||    
T  16209539 gagaaatgctagcaacacatattctaacatacacttttcaacgcattctctttgatcagttaaaattca 16209471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 25604615 - 25604655
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgag 72  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  25604615 gggaacaacgtttgaccagtatgcatgcctctacgcatgag 25604655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 37560194 - 37560282
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||||||||  ||||| |||||| |||||||| ||||| ||||| | |   ||||||||||| ||| ||| |||||||||||||    
T  37560194 gggaacaacgtttggtcagtgcgcatgcctctacgcacgagccggattaatcgtccacctttgatgggtcgaaaaccggtgtgaaagcc 37560282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 42094192 - 42094224
Alignment:
Q  135 ataagagaaatgctagcaacacacattttaaca 167  Q
    |||||||||||||||||||||||||||||||||    
T  42094192 ataagagaaatgctagcaacacacattttaaca 42094224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 16325616 - 16325703
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||  ||| ||||||||||||| |||||||||||||| ||||||| |   ||| ||| ||| ||||||| ||||| ||||||    
T  16325616 gggaacaacacttggccagtgtgcatgcctctacgcatgagccagattagtcgtccaccattggtgggtcggaaaccggtgcgaaagc 16325703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 33171611 - 33171650
Alignment:
Q  176 tcaacacactttctttgattggttgaaattcatatgggtc 215  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  33171611 tcaacacactttctttgattgtttaaaattcatatgggtc 33171650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 41220657 - 41220744
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||| ||| |||||| |||||| ||||||||||||||  |||||| | | ||||||  ||| ||||||| ||||| |||||||    
T  41220657 ggaacaacgcttggccagtgcgcatgcctctacgcatgagccgaattagtcgttcacctttagtgggtcggaaaccggtgcgaaagcc 41220744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 41496035 - 41496102
Alignment:
Q  140 agaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    ||||||| || ||||| | ||||||||| |||||| |||| ||||| ||||||||||||| |||||||    
T  41496035 agaaatggtaacaacatatattttaacacacacttttcaatacactatctttgattggttaaaattca 41496102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 12779481 - 12779550
Alignment:
Q  143 aatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    |||||||||||||||| || ||||||||| || |||||||| ||  ||||||||||| ||||||| |||||    
T  12779481 aatgctagcaacacaccttctaacatacatttttcaacaca-ttcttttgattggttaaaattcacatggg 12779550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 16636172 - 16636114
Alignment:
Q  10 aatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgca 68  Q
    ||||||| |||| ||||| ||||| ||||||  |||| |||||||||||||||||||||    
T  16636172 aatatcgggttcgatttttagaggaaacaacacttgatcagtgtgcatgcttctacgca 16636114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 16813273 - 16813200
Alignment:
Q  8 agaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||| | ||||||| |||||| ||||||||||||||||||||  |||||| |||| ||| ||||| |||||||    
T  16813273 agaataccaagttcaactttcag-gggaacaacgtttgaccagtacgcatgcctctatgcacgagccggattagt 16813200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 16852552 - 16852479
Alignment:
Q  8 agaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||| | ||||||| |||||| ||||||||||||||||||||  |||||| |||| ||| ||||| |||||||    
T  16852552 agaataccaagttcaactttcag-gggaacaacgtttgaccagtacgcatgcctctatgcacgagccggattagt 16852479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 18719707 - 18719774
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||| ||||||||||||||||||| ||||  ||| || |||||||||| | ||||||||||| |||||||    
T  18719707 agaggaatgctagcaacacacattctaac--acatttttcaacacactctttttgattggttaaaattca 18719774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 24179589 - 24179639
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||||||||| ||||||  ||||| |||||||||||||| |||||||    
T  24179589 gggaacaacgtttggccagtgcacatgcctctacgcatgagccggattagt 24179639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 37810121 - 37810195
Alignment:
Q  139 gagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattcatatggg 213  Q
    |||||||| |||||| | ||||||||||  | |||| |||||||||| |||||||||||||  |||||| |||||    
T  37810121 gagaaatggtagcaaaatacattttaactcatacttttcaacacactctctttgattggttataattcacatggg 37810195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 13026519 - 13026446
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||| |||| ||| ||||  ||||||| | ||| |||||| |||||| |||||||||||||| |||||||    
T  13026519 gaatatcgggttcgattatcaggaggaacaatgattggccagtgcgcatgcctctacgcatgagccggattagt 13026446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 14169717 - 14169644
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||||||| |||| ||| || | |||||||||  |||||||||| |||||  |||||||||||||| |||||||    
T  14169717 gaatatcgggttcgattctccgggggaacaacacttgaccagtgcgcatgtctctacgcatgagccggattagt 14169644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 19976915 - 19976806
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatc 108  Q
    ||||| || |||| |||||||| ||||| ||||||||  ||||| |||||  ||||||||| || |  |||||| ||  ||||||||||  |||||||||    
T  19976915 gaataccgggttcgattttcagggggaataacgtttggtcagtgcgcatgtctctacgcataagtcgaattagtcgcccacctttgatgaatcggaaatc 19976816  T
Q  109 ggtgtgaaag 118  Q
    |||| |||||    
T  19976815 ggtgcgaaag 19976806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 29422222 - 29422323
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||| |||| |||||||||||||  ||| ||| || |||| | | |||||| ||||| ||||||| |   ||||||||||| ||||||||||||| ||||    
T  29422222 gttcgatttccagagggaacaacacttggccaatgagcatacctttacgcacgagccggattagtcgtccacctttgatggatcggaaatcggtgcgaaa 29422321  T
Q  118 gc 119  Q
    ||    
T  29422322 gc 29422323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 31596541 - 31596476
Alignment:
Q  8 agaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagc 73  Q
    ||||||||  |||| |||||||| |||||||| ||||| ||||||  ||| |||||||||||||||    
T  31596541 agaatatcaggttctattttcagggggaacaatgtttggccagtgcacatacttctacgcatgagc 31596476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 38962761 - 38962834
Alignment:
Q  9 gaatatcgagttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    ||||| || |||| ||||||||  ||||||||| ||| |||||| |||||| ||||||||||| || |||||||    
T  38962761 gaataccgggttcgattttcaggaggaacaacgcttggccagtgcgcatgcctctacgcatgaaccggattagt 38962834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 6979150 - 6979095
Alignment:
Q  149 agcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaatt 205  Q
    ||||||||||||||||||| |||||| |||||||| ||| ||| ||||||| |||||    
T  6979150 agcaacacacattttaacacacacttttcaacaca-ttttttttattggttaaaatt 6979095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 9430305 - 9430233
Alignment:
Q  135 ataagagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggttgaaattca 207  Q
    |||||| ||||||||  |||||||||| ||||| |||||| |||||| | | | ||||||||||| |||||||    
T  9430305 ataagaaaaatgctaataacacacattctaacacacacttttcaacatattctatttgattggttaaaattca 9430233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 15079490 - 15079546
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcc 74  Q
    |||| |||| ||| |||||||||| ||||||||||||||||  |||||||| |||||    
T  15079490 gttcgatttccagggggaacaacgcttgaccagtgtgcatgactctacgcacgagcc 15079546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 45263756 - 45263704
Alignment:
Q  28 cagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgatta 80  Q
    |||||||||||||| ||| |||||| |||||| |||||||| ||||| |||||    
T  45263756 cagagggaacaacgcttggccagtgcgcatgcctctacgcacgagccggatta 45263704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 6879 - 6966
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||  ||| |||||| |||||| |||||||||||||| ||||||| ||| ||||||| ||| ||||||| ||||| ||||||    
T  6879 gggaacaacacttggccagtgcgcatgcctctacgcatgagccggattagtcgctcacctttggtgggtcggaaaccggtgcgaaagc 6966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 594 - 681
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||  |||| |||||||||||| |||||| ||||||| ||||||| ||| ||||||| ||| ||||||| ||||| ||||||    
T  594 gggaacaacacttgatcagtgtgcatgcctctacgtatgagccagattagtcgctcacctttggtgggtcggaaaccggtgcgaaagc 681  T

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Target: scaffold0209 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 12596 - 12685
Alignment:
Q  31 agggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagcc 120  Q
    ||||||||||| |||||||||| |||||| |||||||||||| | ||||||| ||  ||||||||||| |  |||| ||||| |||||||    
T  12596 agggaacaacgcttgaccagtgcgcatgcctctacgcatgagtcggattagtcgcccacctttgatggattagaaaccggtgcgaaagcc 12685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 95063 - 94985
Alignment:
Q  35 aacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacc-tttgatggttcggaaatcggtg 112  Q
    |||||||||||||||||| |||||| | |||||||||||| ||||||| ||  ||| |||| ||| |||||||||||||    
T  95063 aacaacgtttgaccagtgcgcatgcctttacgcatgagccggattagtcgcccaccatttggtgggtcggaaatcggtg 94985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 12695 - 12780
Alignment:
Q  33 ggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    ||||||||| ||| ||||||||||||| |||||||| || || ||||||| ||  ||||||||||| || |||| ||||| |||||    
T  12695 ggaacaacgcttggccagtgtgcatgcctctacgcacgaaccggattagtcgcccacctttgatgggtcagaaaccggtgcgaaag 12780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 201122 - 201065
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgatt 195  Q
    |||| ||||||| ||| ||||||||||||| |||||| |||||||||| |||||||||    
T  201122 agaggaatgctaacaatacacattttaacacacacttatcaacacactctctttgatt 201065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 250101 - 250024
Alignment:
Q  41 gtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaag 118  Q
    ||||| |||||| |||||| |||||||| ||||| ||||||| |||  |||||| ||| ||||||||||||| |||||    
T  250101 gtttggccagtgcgcatgcctctacgcacgagccggattagtcgctcgcctttggtgggtcggaaatcggtgcgaaag 250024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 136486 - 136425
Alignment:
Q  138 agagaaatgctagcaacacacattttaacatacacttgtcaacacactttctttgattggtt 199  Q
    |||| ||||||||||| ||||||||||||| ||| || |||||||||| | |||||||||||    
T  136486 agaggaatgctagcaatacacattttaacacacatttttcaacacactctttttgattggtt 136425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 26193 - 26257
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagt 82  Q
    |||| |||| ||| |||||||||| ||| ||||||||||||| |||||||| ||||| |||||||    
T  26193 gttcgatttccagggggaacaacgcttggccagtgtgcatgcctctacgcacgagccggattagt 26257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 65237 - 65150
Alignment:
Q  32 gggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaagc 119  Q
    |||||||||| ||| |||||| |||||  |||||||||||||  ||||||| ||| || |||||| | ||||||| ||||| ||||||    
T  65237 gggaacaacgcttggccagtgcgcatgtctctacgcatgagctggattagtcgctcacttttgatagatcggaaaccggtgcgaaagc 65150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 1713 - 1612
Alignment:
Q  18 gttcaattttcagagggaacaacgtttgaccagtgtgcatgcttctacgcatgagcctgattagttgctaacctttgatggttcggaaatcggtgtgaaa 117  Q
    |||| |||| ||| |||||||||| ||  |||||| |||||| ||||||||||||||  |||||| ||  ||||||| ||| ||| ||| ||||| ||||    
T  1713 gttcgatttccagggggaacaacgattagccagtgcgcatgcctctacgcatgagccaaattagtcgcccacctttggtgggtcgaaaaccggtgcgaaa 1614  T
Q  118 gc 119  Q
    ||    
T  1613 gc 1612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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