View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17422_low_35 (Length: 251)

Name: NF17422_low_35
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17422_low_35
NF17422_low_35
[»] chr3 (20 HSPs)
chr3 (1-251)||(679469-679719)
chr3 (16-251)||(747402-747637)
chr3 (25-218)||(2501751-2501944)
chr3 (35-221)||(2659420-2659606)
chr3 (23-139)||(7324687-7324803)
chr3 (23-141)||(2491753-2491871)
chr3 (35-218)||(2644633-2644819)
chr3 (20-141)||(9594898-9595019)
chr3 (23-141)||(9566094-9566212)
chr3 (32-141)||(7443269-7443378)
chr3 (23-141)||(2474776-2474895)
chr3 (23-130)||(9562235-9562342)
chr3 (31-141)||(754888-754998)
chr3 (43-141)||(7334560-7334658)
chr3 (16-141)||(2631013-2631138)
chr3 (23-141)||(2476308-2476426)
chr3 (186-251)||(2635229-2635294)
chr3 (162-250)||(2474662-2474749)
chr3 (156-218)||(2630909-2630971)
chr3 (162-222)||(9595049-9595109)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 679469 - 679719
Alignment:
Q  1 ggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679469 ggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaac 679568  T
Q  101 aaccttatctttatcaatgaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaagga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||    
T  679569 aaccttatctttatcaatgaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggagggagtaacttatactttctaacggaagga 679668  T
Q  201 ttccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcg 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  679669 ttccacaacaaataagaaccagcttttagcattcagcaaaagatgccatcg 679719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 747402 - 747637
Alignment:
Q  16 aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc 115  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||  |||||    
T  747402 aataatgtgggatgccctctattcttttccaataatcagcccccaaagtattaaaaaaaacctctttttctgaagaaacaacaacgaccttataattatc 747501  T
Q  116 aatgaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  747502 aatgaaatgatcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaatat 747601  T
Q  216 gaaccagcttttagcatgcagcaaaagatgccatcg 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  747602 gaaccagcttttagcatgcagcaaaagatgccatcg 747637  T

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Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 2501944 - 2501751
Alignment:
Q  25 ggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatg 124  Q
    ||||| |||||||  || |||||||||||  ||||||||||||||| | ||| || |||||   |||||||||||  |||||||  ||||||||||||||    
T  2501944 ggatgtcctctatctttctccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaacaatgaccttataattatcaatgaaatg 2501845  T
Q  125 atcatatccaaagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa 218  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| | |||| || ||||| |||||||||| |||||||| |||||||||    
T  2501844 atcatatccaaagcttagtgatgtccattcgtgattctccaaaggaggcaataacttaaactttgtaatggaagggttccacaagaaataagaa 2501751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 2659420 - 2659606
Alignment:
Q  35 tattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatcca 134  Q
    ||||||| |||||||||||  ||||||||||||||||| || | ||||||   |||||    ||||||||||||  |||||||| |||||||||||||||    
T  2659420 tattcttctccaataatcagtccccaaagtattaacactaatcacttttttgaaagaatgggcaacaaccttataattatcaataaaatgatcatatcca 2659519  T
Q  135 aagcttagtgatgtccatatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaacca 221  Q
    ||||||||| ||| |||| ||||||||  ||||||||| | |||| || |||||||||||||||| ||||| || ||||||||||||    
T  2659520 aagcttagtaatgaccatttgtgattccgcaaaggaggcaataacttaaactttctaatggaagggttccataagaaataagaacca 2659606  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 7324687 - 7324803
Alignment:
Q  23 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 122  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||||| ||| |  ||||  |||||||||||||  |||||||  |||||||| |||    
T  7324687 tgggatgtcctctattcttgtccaataatcagtccccaaagtattaacactaactttatttttggaagaaacaacaatgaccttatagttatcaattaaa 7324786  T
Q  123 tgatcatatccaaagct 139  Q
    ||||| || ||||||||    
T  7324787 tgatcgtacccaaagct 7324803  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 2491871 - 2491753
Alignment:
Q  23 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 122  Q
    ||||||| |||  ||||||||||||||||||  ||||||||||| ||||| ||| || ||||| ||||||||| |||  |||||||  | ||||||||||    
T  2491871 tgggatgtccttgattcttgtccaataatcagtccccaaagtataaacactaacttcattttcggaagaaacaccaatgaccttataatcatcaatgaaa 2491772  T
Q  123 tgatcatatccaaagctta 141  Q
    |||||||| ||||||||||    
T  2491771 tgatcatacccaaagctta 2491753  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 2644633 - 2644819
Alignment:
Q  35 tattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatcca 134  Q
    |||||||||||||||||||  ||||||||||||||| | ||| || |||||   |||||||| ||  |||||||  ||||||| ||| ||||||||||||    
T  2644633 tattcttgtccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaataatgaccttataattatcaacgaagtgatcatatcca 2644732  T
Q  135 aagcttagtgatgtccata----tgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa 218  Q
    |||||||||| | |  |||    ||||| | ||||||||||| | |||| || ||||||||| |||||| |||||||| |||||||||    
T  2644733 aagcttagtgttct-gataaaattgtgactttccaaaggaggcaataacttaaactttctaacggaagggttccacaagaaataagaa 2644819  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 9594898 - 9595019
Alignment:
Q  20 atgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatg 119  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||| |||| |||| || ||||  |||| || | |||  |||||||  |||||||||    
T  9594898 atgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcatttttggaagcaaaatcaatgaccttatacttatcaatg 9594997  T
Q  120 aaatgatcatatccaaagctta 141  Q
    ||||||||||| || |||||||    
T  9594998 aaatgatcatacccgaagctta 9595019  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 9566094 - 9566212
Alignment:
Q  23 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 122  Q
    ||||||| |||||||||||||||||||||||  ||||||||||| ||||| ||| || |||| || |||||||  ||  | |||||  ||||||||||||    
T  9566094 tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacactaacttcattttttgtagaaacagaaatgagcttataattatcaatgaaa 9566193  T
Q  123 tgatcatatccaaagctta 141  Q
    |||||||| ||||| ||||    
T  9566194 tgatcatacccaaaactta 9566212  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 7443269 - 7443378
Alignment:
Q  32 ctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatat 131  Q
    |||||||||| |||||||||||  |||||||| ||||||| ||||||| | ||  ||||||| | ||||||| ||||  ||||||||||||||||||||     
T  7443269 ctctattcttctccaataatcagtccccaaagcattaacaaaaacctcatatttggaagaaatagcaacaactttataattatcaatgaaatgatcatac 7443368  T
Q  132 ccaaagctta 141  Q
    ||||| ||||    
T  7443369 ccaaaactta 7443378  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 2474895 - 2474776
Alignment:
Q  23 tgggatgccctctattcttgtccaataatca-tcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaa 121  Q
    ||||||| ||||||||||||||||||||||| |||   ||||||||||||| ||| || ||||  |||||||  ||||   |||| |  |||||||||||    
T  2474895 tgggatgtcctctattcttgtccaataatcagtccttaaaagtattaacactaacttcatttttggaagaaaatacaatggccttgtaattatcaatgaa 2474796  T
Q  122 atgatcatatccaaagctta 141  Q
    ||||||||||||||||||||    
T  2474795 atgatcatatccaaagctta 2474776  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 9562235 - 9562342
Alignment:
Q  23 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 122  Q
    ||||||| ||||||||||  |||||||||||  ||||||||||| ||||| ||| || ||||  | |||||||||||  |||||||  ||||||||||||    
T  9562235 tgggatgtcctctattctcttccaataatcagtccccaaagtataaacactaacttcatttttggtagaaacaacaatgaccttataattatcaatgaaa 9562334  T
Q  123 tgatcata 130  Q
    ||||||||    
T  9562335 tgatcata 9562342  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 754888 - 754998
Alignment:
Q  31 cctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcata 130  Q
    |||||||||||||||||||||||  |||||| |||| ||||||||| || |||| || |||||||  ||  ||||| |  |||| |||||||||||||||    
T  754888 cctctattcttgtccaataatcagtccccaatgtataaacacaaacttcattttttgtagaaacagaaatgaccttgtaattatgaatgaaatgatcata 754987  T
Q  131 tccaaagctta 141  Q
     ||||||||||    
T  754988 cccaaagctta 754998  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 7334560 - 7334658
Alignment:
Q  43 tccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaatgatcatatccaaagctta 141  Q
    |||||||||||   |||||||||| ||||| ||| | ||||| |  ||||||| |||| |||||||  ||||||||||||||||||||||| |||||||    
T  7334560 tccaataatcagttcccaaagtataaacactaacttttttttttacagaaacagcaacgaccttataattatcaatgaaatgatcatatccgaagctta 7334658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 2631138 - 2631013
Alignment:
Q  16 aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatc 115  Q
    |||||| ||||||| | ||||||||| |||||||||||  ||| ||||||| || | |||| || ||||  ||||||||| |||  |||||||  |||||    
T  2631138 aataatatgggatgtcgtctattcttttccaataatcagtccctaaagtataaagaaaaacttcatttttggaagaaacagcaatgaccttatacttatc 2631039  T
Q  116 aatgaaatgatcatatccaaagctta 141  Q
    |||||||  |||||| ||||||||||    
T  2631038 aatgaaacaatcatacccaaagctta 2631013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 2476426 - 2476308
Alignment:
Q  23 tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatgaaa 122  Q
    ||||||| |||  ||||||||||||||||||  ||||||||||||||||| ||| || ||||    |||||||| ||  ||||| |  ||||||||  ||    
T  2476426 tgggatgtcctgcattcttgtccaataatcagtccccaaagtattaacactaacttcgtttttgtcagaaacaagaatgaccttgtagttatcaatagaa 2476327  T
Q  123 tgatcatatccaaagctta 141  Q
    |||||||| ||||||||||    
T  2476326 tgatcatacccaaagctta 2476308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 2635294 - 2635229
Alignment:
Q  186 tttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcg 251  Q
    |||||||||||||| |||||||  ||||||||||||||||| ||||  | || |||||||||||||    
T  2635294 tttctaatggaagggttccacagaaaataagaaccagctttgagcacaccgctaaagatgccatcg 2635229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 2474749 - 2474662
Alignment:
Q  162 tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatc 250  Q
    ||||||||||| | |||| || | |||| ||||||||| |||||||| |||||||| ||| |||| ||| ||| |||||||||||||||    
T  2474749 tccaaaggaggcaataacttaaattttccaatggaagggttccacaa-aaataagagccatctttgagcgtgccgcaaaagatgccatc 2474662  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 2630971 - 2630909
Alignment:
Q  156 tgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa 218  Q
    ||||| ||||| ||||| | |||| || |||||||||||||||| |||||||| |||||||||    
T  2630971 tgattttccaatggaggcaataacttaaactttctaatggaagggttccacaagaaataagaa 2630909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 9595049 - 9595109
Alignment:
Q  162 tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccag 222  Q
    ||||||||||| | |||| || | |||||||||||||| |||||||| | |||||||||||    
T  9595049 tccaaaggaggcaataacttaaattttctaatggaagggttccacaaaacataagaaccag 9595109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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