View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_39 (Length: 223)
Name: NF17422_low_39
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 15656171 - 15656362
Alignment:
| Q |
16 |
caaatatcagtgttgttgtttcacttcagaataacatacaacttatatgacattttgtttgctgagcatattgctaaattgcattgaaactgttataaag |
115 |
Q |
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| T |
15656171 |
caaatatcaatgttgttgtttcacttcagaataacatacaacttatatgacattttgtttgctgagcatattgctaaattgcattgaaactgttataaag |
15656270 |
T |
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| Q |
116 |
gatactagagttcaaagtataagtgctcttcaaatttatattatggtccttttaaggtgctgcttctgctttcttgttaacccaggaataaa |
207 |
Q |
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| T |
15656271 |
gatactagagttcaaagtataagtgctcttcaaatttatattatggtctttttaaggtgctgcttctgctttcttgttaacacaagaataaa |
15656362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 15644522 - 15644663
Alignment:
| Q |
16 |
caaatatcagtgttgttgtttcacttcagaataacatacaacttatatgacattttgtttgctgagcatattgctaaattgcattgaaactgttataaag |
115 |
Q |
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| T |
15644522 |
caaatatcaatgttgttgtttcacttcagaataacatacaacttatatgacattttgtttgctgagcatattgctaaattgcattgaaactgttatagag |
15644621 |
T |
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| Q |
116 |
gatactagagttcaaagtataagtgctcttcaaatttatatt |
157 |
Q |
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| T |
15644622 |
gatactagagttcaaagtataagtgctcttcaaatttatatt |
15644663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 15620753 - 15620894
Alignment:
| Q |
16 |
caaatatcagtgttgttgtttcacttcagaataacatacaacttatatgacattttgtttgctgagcatattgctaaattgcattgaaactgttataaag |
115 |
Q |
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| T |
15620753 |
caaatatcaatgttgttgtttcacttcagaataacatacaacttatatgacattttgtttgctgagcgtattgctaaattgcattgaaactgttatagag |
15620852 |
T |
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| Q |
116 |
gatactagagttcaaagtataagtgctcttcaaatttatatt |
157 |
Q |
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| T |
15620853 |
gatactagagttcaaagtataagtgctcttcaaatttatatt |
15620894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 16641744 - 16641699
Alignment:
| Q |
84 |
tattgctaaattgcattgaaactgttataaaggatactagagttca |
129 |
Q |
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| T |
16641744 |
tattgctgaattgcattgaaactgttatacaggtttctagagttca |
16641699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 17636501 - 17636459
Alignment:
| Q |
165 |
ttttaaggtgctgcttctgctttcttgttaacccaggaataaa |
207 |
Q |
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| T |
17636501 |
ttttaaggtgcttcttctgctttcttgttaacataggaataaa |
17636459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 3914833 - 3914882
Alignment:
| Q |
158 |
atggtccttttaaggtgctgcttctgctttcttgttaacccaggaataaa |
207 |
Q |
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| T |
3914833 |
atggtctttttaaggtgctgcttcagcttccttgttaacacatgaataaa |
3914882 |
T |
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