View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_8 (Length: 455)
Name: NF17422_low_8
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_8 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 11488 - 11068
Alignment:
| Q |
19 |
catctaactcaacattccaatcttcacatgaagtttcatctaacacagacttatcatgtttaaacgaagtttcatcgtctgactcaacattatcatcttc |
118 |
Q |
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| T |
11488 |
catctaactcaacattccaatcttcacatgaagtttcatctaacacagacttatcatgttcaaatgaagtttcatcgtctgactcaacataatcatcttc |
11389 |
T |
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| Q |
119 |
aaatgaagtttcagggctgattgttactcccctttttccaatgtcattcattttataactttccttgcttatctttctatctaactcatcatcatcctct |
218 |
Q |
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| T |
11388 |
aaatgaagtttcagagctgattgttactacccttttgccaatgtcattcattttataactttccttgcttatctttctatctaactcatcatcatcctct |
11289 |
T |
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| Q |
219 |
tcaacattacaactttctatcagtttagacctgttatgcaactgctgtactggttggttaccggtacaaagtcggccaaaatagtacatgggttcaatat |
318 |
Q |
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| T |
11288 |
tcaacattacaactttctatcagtttagacctgttatgcaactgctgtactggttggttaccggtacaaagtcggccaaaatagtacatgggttcaatat |
11189 |
T |
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| Q |
319 |
agcatgtagaggaagaaacaatacccttcagactgctcggcttgacaagcttaataaaatcctccagctctgcatagtttgaatgatcagagtagggaac |
418 |
Q |
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| T |
11188 |
agcatgtagaggaagaaacaatacccttcagactgcttggcttgacaagcttaataaaatcctccagctctgcatagtttgaatgatcagagtagggaac |
11089 |
T |
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| Q |
419 |
tgaaaatacatacttgttcaa |
439 |
Q |
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| T |
11088 |
tgaaaatacatacttgttcaa |
11068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 268 - 435
Target Start/End: Complemental strand, 21916043 - 21915876
Alignment:
| Q |
268 |
ctggttggttaccggtacaaagtcggccaaaatagtacatgggttcaatatagcatgtagaggaagaaacaatacccttcagactgctcggcttgacaag |
367 |
Q |
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| T |
21916043 |
ctggttggttaccggtacaaagtcggccaaagtagtacatgggttcaatatagcatgtagaggaagaaacgatacccttcagactacttggcttgacaag |
21915944 |
T |
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| Q |
368 |
cttaataaaatcctccagctctgcatagtttgaatgatcagagtagggaactgaaaatacatacttgt |
435 |
Q |
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| T |
21915943 |
cttaataaaatcctctagctctgcacagtttgaatgatcagagtaaggaactgaaaatatatacttgt |
21915876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 21916184 - 21916061
Alignment:
| Q |
100 |
actcaacattatcatcttcaaatgaagtttcagggctgattgttactcccctttttccaatgtcattcattttataactttccttgcttatctttctatc |
199 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||| | | |||| | |||||||||||||||||| |||||||| |
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| T |
21916184 |
actcaacattatcatcttcaaatgatgtttcagggttgattgttaccacccttttaccacttcctttcagtaaataactttccttgcttatgtttctatc |
21916085 |
T |
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| Q |
200 |
taactcatcatcatcctcttcaac |
223 |
Q |
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||||||| ||| | | |||||||| |
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| T |
21916084 |
taactcaacattaacatcttcaac |
21916061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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