View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17422_low_9 (Length: 455)
Name: NF17422_low_9
Description: NF17422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17422_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 47 - 416
Target Start/End: Complemental strand, 38523221 - 38522852
Alignment:
| Q |
47 |
acattattgagcttggtgttccatactcggatcctttggcagatggtcctgttatccaggtttgttaatttcattctttcttattttctataatgctgat |
146 |
Q |
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| T |
38523221 |
acattattgagcttggtgttccatactcggatcctttggcagatggtcctgttatccaggtttgttaatttcattctttcttattttctataatgctgat |
38523122 |
T |
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| Q |
147 |
attattataatttatcactgtctttaatgattctcaaactgatgtgtctttctgttcaggctgcttctacaagatctttggcaagggggacagattttga |
246 |
Q |
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| T |
38523121 |
attattataatttatcactgtctttaatgattctcaaactgatgtgtctttctgttcaggctgcttctacaagatctttggcaagggggacagattttga |
38523022 |
T |
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| Q |
247 |
ttcaattatttacatgttgaaggaggtacagttttatgaaactattttccatttattgagtattcatctgtgtcgcactactaatttttgtgtgcattgt |
346 |
Q |
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| T |
38523021 |
ttcaattatttacatgttgaaggaggtacagttttatgaaactattttccatttattgagtattcatctgtgtcgcactactaatttttgtgtgcattgt |
38522922 |
T |
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| Q |
347 |
tatctagttaaaactatttttcgtgacattctaaatggttgatttttcaggttgttccagaattatctac |
416 |
Q |
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| T |
38522921 |
tatctagttaaaactattttttgtgacattctaaatggttgatttttcaggttgttccagaattatctac |
38522852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 300
Target Start/End: Original strand, 41387303 - 41387422
Alignment:
| Q |
180 |
tcaaactgatgtgtctttctgttcaggctgcttctacaagatctttggcaagggggacagattttgattcaattatttacatgttgaaggaggtacagtt |
279 |
Q |
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| T |
41387303 |
tcaaactgacatgtctttctgttcaggctgctgctacacgagctttagcaagggggagcaattttgattcaattatttctatgttgaatgaggta-attt |
41387401 |
T |
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| Q |
280 |
ttatgaaactattttccattt |
300 |
Q |
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|||||||| |||| |||||| |
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| T |
41387402 |
ctatgaaaccatttgccattt |
41387422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 41387199 - 41387259
Alignment:
| Q |
49 |
attattgagcttggtgttccatactcggatcctttggcagatggtcctgttatccaggttt |
109 |
Q |
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| T |
41387199 |
attattgagcttggcgttccatattctgatcctttggcagatggtcctgttattcaggttt |
41387259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 41388398 - 41388427
Alignment:
| Q |
331 |
tttttgtgtgcattgttatctagttaaaac |
360 |
Q |
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| T |
41388398 |
tttttgtgtgcattgttatctagttaaaac |
41388427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 3300997 - 3300914
Alignment:
| Q |
174 |
tgattctcaaactgatgtgtctttctgttcaggctgcttctacaagatctttggc-aagggggacagattttgattcaattattt |
257 |
Q |
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||||||||||||||||||||||||||| || || |||| ||||| ||||||| || ||||||||| |||||||||||||||||| |
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| T |
3300997 |
tgattctcaaactgatgtgtctttctg-tccggatgctgctacacgatctttagcaaagggggaccaattttgattcaattattt |
3300914 |
T |
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