View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17423_high_3 (Length: 411)

Name: NF17423_high_3
Description: NF17423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17423_high_3
NF17423_high_3
[»] chr2 (5 HSPs)
chr2 (23-351)||(23348413-23348741)
chr2 (23-387)||(12742048-12742414)
chr2 (23-347)||(18354744-18355074)
chr2 (184-387)||(10328422-10328627)
chr2 (23-55)||(10328626-10328658)
[»] scaffold0596 (1 HSPs)
scaffold0596 (23-387)||(1014-1378)
[»] chr7 (3 HSPs)
chr7 (23-347)||(43070819-43071143)
chr7 (23-175)||(1262449-1262601)
chr7 (23-175)||(48849391-48849543)
[»] chr3 (8 HSPs)
chr3 (23-387)||(53972682-53973047)
chr3 (23-351)||(19881544-19881872)
chr3 (194-352)||(37982939-37983097)
chr3 (23-202)||(37982712-37982891)
chr3 (85-175)||(31685485-31685575)
chr3 (23-74)||(31685438-31685489)
chr3 (108-153)||(17682201-17682246)
chr3 (108-153)||(19766443-19766488)
[»] chr5 (4 HSPs)
chr5 (23-347)||(9044162-9044486)
chr5 (23-387)||(7472880-7473250)
chr5 (23-347)||(30441983-30442307)
chr5 (231-313)||(40163917-40163996)
[»] scaffold0035 (1 HSPs)
scaffold0035 (23-176)||(35421-35574)
[»] chr8 (4 HSPs)
chr8 (23-176)||(14677630-14677783)
chr8 (23-168)||(31100488-31100633)
chr8 (23-168)||(5658131-5658261)
chr8 (23-104)||(33688978-33689060)
[»] chr4 (1 HSPs)
chr4 (23-176)||(29862969-29863122)
[»] scaffold0045 (1 HSPs)
scaffold0045 (23-176)||(11242-11395)
[»] chr6 (5 HSPs)
chr6 (23-109)||(22000988-22001074)
chr6 (82-168)||(33045062-33045148)
chr6 (99-176)||(10092908-10092985)
chr6 (23-85)||(10092851-10092913)
chr6 (31-61)||(33045154-33045184)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 23 - 351
Target Start/End: Complemental strand, 23348741 - 23348413
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23348741 catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 23348642  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta 222  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23348641 ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta 23348542  T
Q  223 acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23348541 acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat 23348442  T
Q  323 aaattgattgatactttaaaatcatgtgt 351  Q
    |||||||||||||||||||||||||||||    
T  23348441 aaattgattgatactttaaaatcatgtgt 23348413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 23 - 387
Target Start/End: Original strand, 12742048 - 12742414
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  12742048 catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgccgccgcagctctctcctgtcgtcgcccttcaccaatgct 12742147  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta 222  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12742148 ctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagcaaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta 12742247  T
Q  223 acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12742248 acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat 12742347  T
Q  323 aaattgattgatactttaaaatc--atgtgtannnnnnnnncaaacacaccaatatgtccattgatg 387  Q
    |||||||||||||||||||||||  |||||||         ||||||||||||||||||||||||||    
T  12742348 aaattgattgatactttaaaatcatatgtgtatttttttttcaaacacaccaatatgtccattgatg 12742414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 18355074 - 18354744
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18355074 catcttccatctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 18354975  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatat------cctaaatcgttgtt 216  Q
    |||||||| ||| |||||||||  ||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||      ||||||||||||||    
T  18354974 ctcgattccgacatcaccttcgctgttgttgtctgcggcgtcgtatcagtcaggtgtgttgaagatgctactatatatatatatatcctaaatcgttgtt 18354875  T
Q  217 cttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgct 316  Q
    | |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18354874 cctgtagcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgct 18354775  T
Q  317 attaataaattgattgatactttaaaatcat 347  Q
     ||||||||||||||||||||||||||||||    
T  18354774 cttaataaattgattgatactttaaaatcat 18354744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 184 - 387
Target Start/End: Complemental strand, 10328627 - 10328422
Alignment:
Q  184 aagatgctactatatatat--cctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatg 281  Q
    |||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10328627 aagatgctactatatatatatcctaaatcgttgttcatgtatcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatg 10328528  T
Q  282 atatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgtannnnnnnnncaaacacaccaatatgtcca 381  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  10328527 atatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtatttttttttcaaacacaccaatatgtcca 10328428  T
Q  382 ttgatg 387  Q
    ||||||    
T  10328427 ttgatg 10328422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 10328658 - 10328626
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaa 55  Q
    |||| ||||||||||||||||||||||||||||    
T  10328658 catcttccacctcactctcagacattcaaacaa 10328626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 23 - 387
Target Start/End: Original strand, 1014 - 1378
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1014 catcttccacctcactctcagacatttaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 1113  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta 222  Q
    |||||||| ||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1114 ctcgattccgacatcactttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta 1213  T
Q  223 acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1214 acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat 1313  T
Q  323 aaattgattgatactttaaaatcatgtgtannnnnnnnncaaacacaccaatatgtccattgatg 387  Q
    ||||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||    
T  1314 aaattgattgatattttaaaatcatgtgtatttttttttcaaacacaccaatatgtccattgatg 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 43071143 - 43070819
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43071143 catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 43071044  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta 222  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43071043 ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta 43070944  T
Q  223 acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43070943 acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaat 43070844  T
Q  323 aaattgattgatactttaaaatcat 347  Q
    |||||||||||||||||||||||||    
T  43070843 aaattgattgatactttaaaatcat 43070819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 1262449 - 1262601
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  1262449 catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctttctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 1262548  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 175  Q
    |||||||| ||| ||||||||| ||||||||| ||||||||||||| ||||||    
T  1262549 ctcgattccgacatcaccttcgccgttgtcgtatgcggcatcgtatcagccag 1262601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 48849543 - 48849391
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  48849543 catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctttctccgtcgccgcagctctctcctttcgtcgcccttcaccaatgct 48849444  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 175  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||    
T  48849443 ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag 48849391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 23 - 387
Target Start/End: Complemental strand, 53973047 - 53972682
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53973047 catcttccacctcactctcagacatttaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 53972948  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta 222  Q
    |||||||| ||| |||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  53972947 ctcgattccgacatcactttcgtcgttgtcgtctgcggcatcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta 53972848  T
Q  223 acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53972847 acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat 53972748  T
Q  323 aaattgattgatactttaaaatcatgtgta-nnnnnnnnncaaacacaccaatatgtccattgatg 387  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  53972747 aaattgattgatactttaaaatcatgtgtattttttttttcaaacacaccaatatgtccattgatg 53972682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 351
Target Start/End: Complemental strand, 19881872 - 19881544
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||    
T  19881872 catcttccacctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgtcaccgcagctctctcctgtcctcacccttcaccaatgct 19881773  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta 222  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19881772 ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta 19881673  T
Q  223 acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19881672 acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat 19881573  T
Q  323 aaattgattgatactttaaaatcatgtgt 351  Q
    |||||||||||||||||||||||||||||    
T  19881572 aaattgattgatactttaaaatcatgtgt 19881544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 194 - 352
Target Start/End: Original strand, 37982939 - 37983097
Alignment:
Q  194 tatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatag 293  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37982939 tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatag 37983038  T
Q  294 attttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta 352  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37983039 attttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta 37983097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 37982712 - 37982891
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  37982712 catcttccacctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctatcgtcgcccttcaccaatgct 37982811  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatat 202  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  37982812 ctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctaatatatatat 37982891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 31685485 - 31685575
Alignment:
Q  85 gccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag 175  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||    
T  31685485 gccgcagctctctcctgtcgtcgcccttcaccaatgatatcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag 31685575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 31685438 - 31685489
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgc 74  Q
    |||| |||||||||||||||||||||||||||||||| | ||||||||||||    
T  31685438 catcttccacctcactctcagacattcaaacaaaattatatgccgttgccgc 31685489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 17682201 - 17682246
Alignment:
Q  108 cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg 153  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||    
T  17682201 cccttcaccaatgctctcgattccgacatcacctttgccgttgtcg 17682246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 19766443 - 19766488
Alignment:
Q  108 cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg 153  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||||||||    
T  19766443 cccttcaccaatgctctagattccgacatcaccttcgccgttgtcg 19766488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 347
Target Start/End: Original strand, 9044162 - 9044486
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9044162 catcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 9044261  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta 222  Q
    |||||||  ||| ||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  9044262 ctcgatttcgacatcaccttcgtcgttgtcgtctgcagcatcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgta 9044361  T
Q  223 acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9044362 acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaat 9044461  T
Q  323 aaattgattgatactttaaaatcat 347  Q
    |||||||||||||||||||||||||    
T  9044462 aaattgattgatactttaaaatcat 9044486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 387
Target Start/End: Complemental strand, 7473250 - 7472880
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7473250 catcttccacctcactctcagacattcaaacaaaattctctgccgttgtcgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 7473151  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatat----atatcctaaatcgttgttct 218  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||     
T  7473150 ctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccaggtgtgttgaagatgctactatatatatatatcctaaatcgttgttcc 7473051  T
Q  219 tgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctat 318  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7473050 tgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgt 7472951  T
Q  319 taataaattgattgatactttaaaatc--atgtgtannnnnnnnncaaacacaccaatatgtccattgatg 387  Q
    |||||||||||||||||||||||||||  |||||||         ||||||||||||||||||||||||||    
T  7472950 taataaattgattgatactttaaaatcatatgtgtatttttttttcaaacacaccaatatgtccattgatg 7472880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 23 - 347
Target Start/End: Complemental strand, 30442307 - 30441983
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  30442307 catcttccacctcactctcagacattcaaacaaaattctctgtcgttgccgctctctccgttgccgcagctctctcctgtcgtcgcccttcaccaatgct 30442208  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgta 222  Q
    |||||||| ||| ||||||| | ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  30442207 ctcgattccgacatcaccttggccgttgtcgtctgcggcatcgtatcagccatatgtgttgaagatgctactatatatatcctaaatcgttgttcctgta 30442108  T
Q  223 acttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaat 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  30442107 acttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaat 30442008  T
Q  323 aaattgattgatactttaaaatcat 347  Q
    |||||||||||||||||||||||||    
T  30442007 aaattgattgatactttaaaatcat 30441983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 40163917 - 40163996
Alignment:
Q  231 ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattat 313  Q
    ||||||||||||||||||||||| ||| ||||||||| | ||||||   ||||||||| ||||||||||| || |||||||||    
T  40163917 ctaactttgttattccattatatatttagtttgtttggatgtgaat---tgatatttacatagattttacaattatgtattat 40163996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 35421 - 35574
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||| |||||    
T  35421 catcttccacctcactctcagacattcaaacaaaattctctgccgttgctgctctctccgtcgccgcagctctctcctgtcgtcgcctttgaccgatgct 35520  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 176  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||| |||||||    
T  35521 ctcgattctgacatcaccttcgccgttgtcgtttgcggcatcgtatcagccagg 35574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 14677783 - 14677630
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||    
T  14677783 catcttccacctcactctcagacattcaaacaaaatcctctgccgttgccgctctctccgtcgccgcagctctctcctatcgtcacccttcaccaatgct 14677684  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 176  Q
    |||||||| ||| ||||||||| ||||||||||||| ||||||||| |||||||    
T  14677683 ctcgattccgacatcaccttcgccgttgtcgtctgcagcatcgtatcagccagg 14677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 31100633 - 31100488
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  31100633 catcttccacctcactctcagacattcaaacaaaattctttgccgtcgccactctctccgtcgccgcaactctctcctgtcgtcgcccttcaccaatgct 31100534  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 168  Q
    ||||||||  || ||||||||| |||||||||||| ||||||||||    
T  31100533 ctcgattccaacatcaccttcgccgttgtcgtctgtggcatcgtat 31100488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 5658131 - 5658261
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||               |||||||||||||||||||||||||||||||||||||||    
T  5658131 catcttccacctcactctcagacattcaaacaaaattctttgccgt---------------cgccgcagctctctcctgtcgtcgcccttcaccaatgct 5658215  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 168  Q
    || |||||  || ||||||||| |||||||||||| ||||||||||    
T  5658216 cttgattccaacatcaccttcgccgttgtcgtctgtggcatcgtat 5658261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 33689060 - 33688978
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaa-ttctctgccgttgccgctctctctgtcgccgcagctctctcctgtcg 104  Q
    |||| ||||||||||||| |||||||||||||| | |||||| || | ||||||||||| ||||||||||||||||| |||||    
T  33689060 catcttccacctcactcttagacattcaaacaagacttctctcccatcgccgctctctccgtcgccgcagctctctcatgtcg 33688978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 29863122 - 29862969
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  29863122 catcttccacctcactctcagacattcaaacaaaattctctgtcgctgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccgatgct 29863023  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 176  Q
    |||||||| ||| |||| || | ||||||| ||||||||||||||| |||||||    
T  29863022 ctcgattccgacatcacttttgccgttgtcatctgcggcatcgtatcagccagg 29862969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 11395 - 11242
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgct 122  Q
    |||| |||||||||||| ||||||||||||||||||||| ||  ||  |||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  11395 catcttccacctcactcccagacattcaaacaaaattctttgttgtcaccgctctctccgtcgccgcagctctctcttgtcgtcgcccttcaccaatgct 11296  T
Q  123 ctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 176  Q
    ||||| || ||| ||||||||| |||||||||||||||||| | || |||||||    
T  11295 ctcgaatccgacatcaccttcgccgttgtcgtctgcggcattgcatcagccagg 11242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 22001074 - 22000988
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcc 109  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  22001074 catcttccacctcactttcagacattcaaacaaaattctctgtcgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcc 22000988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 33045148 - 33045062
Alignment:
Q  82 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||||||||||||||    
T  33045148 gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgtcgttgtcgtctgcggcatcgtat 33045062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 10092908 - 10092985
Alignment:
Q  99 ctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccagg 176  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||    
T  10092908 ctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggcatcgtatcagccagg 10092985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 10092851 - 10092913
Alignment:
Q  23 catcatccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctctgtcg 85  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  10092851 catcttccacctcactctcagacattcaaacaaaattctctaacgtcgccgctctctctgtcg 10092913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 33045184 - 33045154
Alignment:
Q  31 acctcactctcagacattcaaacaaaattct 61  Q
    |||||||||||||||||||||||||||||||    
T  33045184 acctcactctcagacattcaaacaaaattct 33045154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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