View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17423_high_5 (Length: 375)
Name: NF17423_high_5
Description: NF17423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17423_high_5 |
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| [»] scaffold0229 (1 HSPs) |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 351
Target Start/End: Complemental strand, 580 - 259
Alignment:
| Q |
30 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
481 |
T |
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| Q |
130 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
381 |
T |
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| Q |
230 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
281 |
T |
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| Q |
330 |
caatagctctaccaacatgatg |
351 |
Q |
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|||||||||||||||||||||| |
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| T |
280 |
caatagctctaccaacatgatg |
259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 351
Target Start/End: Complemental strand, 1274572 - 1274251
Alignment:
| Q |
30 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
129 |
Q |
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| T |
1274572 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
1274473 |
T |
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| Q |
130 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1274472 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
1274373 |
T |
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| Q |
230 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1274372 |
aactcagcacaccttatagccatctgagcaaaccccatagcctcttcaactggccaatctgtcagtcttggatccaacatctcactaaatgttcccttct |
1274273 |
T |
|
| Q |
330 |
caatagctctaccaacatgatg |
351 |
Q |
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|||||||||||||||||||||| |
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| T |
1274272 |
caatagctctaccaacatgatg |
1274251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 275
Target Start/End: Complemental strand, 246 - 1
Alignment:
| Q |
30 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
246 |
atctgaaacagtggttatgcaatgcaagaatgaataagtagagaaagaaacataccatctgaagagagacttggctctgagtagaaggacttgtaaatcc |
147 |
T |
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| Q |
130 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
146 |
actaaacatataatggtgatcattattttcagcaagttctcttaacctattaagttcaggcataatctctttaccaagatcaggtctatctttcctcctt |
47 |
T |
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| Q |
230 |
aactcagcacaccttatagccatctgagcaaaccccatagcctctt |
275 |
Q |
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| T |
46 |
aactcagcacaccttatagccatctgagcaaaccccatagcctctt |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 50439185 - 50439244
Alignment:
| Q |
280 |
tggccaatctgtcagtcttggatccaacatctcactaaatgttcccttctcaatagctct |
339 |
Q |
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| T |
50439185 |
tggccaatcagtcactgtaggatccaacatctcagtaaatgttcctttctcaatagctct |
50439244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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