View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17423_high_6 (Length: 375)
Name: NF17423_high_6
Description: NF17423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17423_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 10194107 - 10194415
Alignment:
| Q |
1 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaactgcatcgcatcaattgcattcactgcgacatggaacttatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
10194107 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaact-----gaatcaattgcattcactgcaacatggaacttatc |
10194201 |
T |
|
| Q |
101 |
aaaattttctgtccctaacaccattccaggcatcctgatatcgggatcaaggaattcgaactcatctgttactgaacatgccgcctaacagtgtttgatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10194202 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgcagcctaacagtgtttgatc |
10194301 |
T |
|
| Q |
201 |
ataaatcgcaaattataattgaca---------agaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
291 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10194302 |
ataaatcgcaaattataattgacaagaaaaaccagaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
10194401 |
T |
|
| Q |
292 |
tctttaaatgcgtt |
305 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10194402 |
tctttaaatgcgtt |
10194415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Original strand, 10194435 - 10194472
Alignment:
| Q |
332 |
ctttgtttccaaaacccaagccagcacagttcatctca |
369 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
10194435 |
ctttgtttccaaaactcaagccagcacagctcatctca |
10194472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 19459272 - 19459235
Alignment:
| Q |
332 |
ctttgtttccaaaacccaagccagcacagttcatctca |
369 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
19459272 |
ctttgtttccaaaactcaagccagcacagctcatctca |
19459235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University