View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17423_low_3 (Length: 236)
Name: NF17423_low_3
Description: NF17423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17423_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38341873 - 38341641
Alignment:
| Q |
1 |
aaaagtgttctttctattccattcaattgttgggttcttaacaatacatcattttatttgcaatctttctcagaatgctaacgggagnnnnnnncctcta |
100 |
Q |
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| T |
38341873 |
aaaagtgttctttctattccattcaattgttgggttcttaacaatacatcattttatttgcaatctttctcagaatgctaacgggagaaaaaaacctcta |
38341774 |
T |
|
| Q |
101 |
aagaagcataaaagatcttctattgttggtgtggaggataaaggtagt-aaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacc |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38341773 |
aagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacc |
38341674 |
T |
|
| Q |
200 |
catttaacaaggctgttgaggttgatgatgtcc |
232 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38341673 |
catttaacaaggctgttgaggttgatgatgtcc |
38341641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 38334025 - 38333888
Alignment:
| Q |
96 |
ctctaaagaagcataaaagatcttctattgttggtgtggaggataaaggtagtaaa-cctcaaggcagccgagaaaacaagcagttcgtgaactgtctaa |
194 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||| | || ||||||||||||| | || ||| |||| |
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| T |
38334025 |
ctctaaagaagcataaaatatcttctattgctggtgtggaggataaaggtggtaaatcctcaaggaaaccaagaaaacaagcagctagtaaacctactaa |
38333926 |
T |
|
| Q |
195 |
aaacccatttaacaaggctgttgaggttgatgatgtcc |
232 |
Q |
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|||| |||| || |||||||| | | ||||||||||| |
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| T |
38333925 |
aaactcattgaatgaggctgttaacggtgatgatgtcc |
38333888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 37549987 - 37550029
Alignment:
| Q |
2 |
aaagtgttctttctattccattcaattgttgggttcttaacaa |
44 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||| |||||| |
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| T |
37549987 |
aaagtgttctttctattccattccattcttgggttcctaacaa |
37550029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 29465756 - 29465797
Alignment:
| Q |
2 |
aaagtgttctttctattccattcaattgttgggttcttaaca |
43 |
Q |
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||||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
29465756 |
aaagtgttctttctattccattcaattcttggattcctaaca |
29465797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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