View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17424_high_12 (Length: 344)
Name: NF17424_high_12
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_high_12 |
 | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 16546632 - 16546961
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16546632 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
16546731 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16546732 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
16546831 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16546832 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
16546931 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16546932 |
ttcaaatatattaaacccgaagatcctatg |
16546961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 17831668 - 17831339
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
17831668 |
tgtagaactagtgagctcacaggtcatgtatgggttcaagaaatattataagggaatcccactcgttgttatgagatgtttagaatgaaaaaacatattt |
17831569 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831568 |
ttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
17831469 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17831468 |
caatgtcggtaatagaatgattcaagaaagatttcaacattagggtgagactgtaagtagacatttacatcgtgtacttcatgcatgccttaagttgtcc |
17831369 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17831368 |
ttcaaatatattaaacccgaagatcctatg |
17831339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 22480691 - 22481020
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22480691 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
22480790 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22480791 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
22480890 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22480891 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
22480990 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22480991 |
ttcaaatatattaaacccgaagatcctatg |
22481020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 16841027 - 16841356
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||||||| |||| | | |||||||||||||||||| |||||| |||||| |
|
|
| T |
16841027 |
tgtagaactagtgtgctcacaagtcatgcatttgtttaagaaatattgcaagggaatctcacttgctattatgagatgtttcgaattgaaaaatatattt |
16841126 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
16841127 |
ttcataaactttacaatgaatacgtggaacatgatttaaagtcttctaaacatataggggttgaagaaatggttgcaatgttttttatcgttgtaggtca |
16841226 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| | | |||||||||||||||| ||||| ||| ||||| ||| |||||| |||||||| ||| |
|
|
| T |
16841227 |
tggtgtaggtaatagaatgattcaataaagatttcaacacttgagtgagactgtaagtagtcatttccatagtgtatttcttgcatgtcttaagttatcc |
16841326 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
||||||||||||||||| |||||| |||| |
|
|
| T |
16841327 |
ttcaaatatattaaacctaaagatcatatg |
16841356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 33231648 - 33231975
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
33231648 |
tgtagaactagtgagctaacaggtcattcttgggttcaagaaatattgcaaggtaatccgactcgttgttatgagatgtttcgaatggaaaaacatgtat |
33231747 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|| || | | ||| | |||| || | | || ||||||||| ||||| | | | ||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
33231748 |
ttaatctattgtgcactaaattagttaagcttggtttaaagtcatctaatcgaacgacggttgaagaaatggttgcaatgtttttagttgttgttggcca |
33231847 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
||| || ||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
33231848 |
cggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagtagatattttcatcgagtacttcatgtcgtccttaagttgtct |
33231947 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatccta |
328 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
33231948 |
atcaaatatattaaacccgaagatccta |
33231975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 22809190 - 22809458
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22809190 |
tgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgtaaggaaatcccactcgttgttatgagatgtttcgaatggaaaaaaatattt |
22809289 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||| | |||| || || |||| ||||||| | |||| || || || || ||||| |||||||||||||| || | ||||| || || |
|
|
| T |
22809290 |
ttcataaactttgcactaaattagttgatcatggtttaaagcccactaatcacataggagtagaagagatggttgcaatgttcttacttgttgttggaca |
22809389 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcat |
270 |
Q |
| |
|
|| || ||||||||||||||||||||||| || ||||| || || || ||||| ||||||| ||||||| |
|
|
| T |
22809390 |
-ggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat |
22809458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 5917852 - 5917523
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5917852 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
5917753 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5917752 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
5917653 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5917652 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
5917553 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5917552 |
ttcaaatatattaaacccgaagatcctatg |
5917523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 36310773 - 36311102
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36310773 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
36310872 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36310873 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
36310972 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36310973 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
36311072 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36311073 |
ttcaaatatattaaacccgaagatcctatg |
36311102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 13895191 - 13895518
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||| || |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
13895191 |
tgtagaactagtgagctaacgggtcattcttgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtat |
13895290 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|| || | | ||| |||||| || | | || ||||||||| ||||| | | | ||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
13895291 |
ttaatctattgtgcactgaattagttaagcttggtttaaagtcatctaatcgaacgacggttgaagaaatggttgcaatgtttttagttgttgttggcca |
13895390 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
||| || ||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
13895391 |
cggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgttagtagatattttcatcgagtacttcatgtcgtccttaagttgtct |
13895490 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatccta |
328 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
13895491 |
atcaaatatattaaacccgaagatccta |
13895518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 14035818 - 14036145
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
14035818 |
tgtagaactagtgagctaacaggtcattcttgggttcaagaaatattgcaaggtaatccaactcgttgttatgagatgtttcgaatggaaaaacatgtat |
14035917 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|| || | | ||| | |||| || | | || ||||||||| ||||| | ||| ||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
14035918 |
ttaatctattgtgcactaaattagttaagcttggtttaaagtcatctaatcgaatgacggttgaagaaatggttgcaatgtttttagttgttgttggcca |
14036017 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
14036018 |
cggggtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtct |
14036117 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatccta |
328 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14036118 |
atcaaatatattaaacccgaagatccta |
14036145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 23361869 - 23361600
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||| |||| |||||||| || ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23361869 |
tgtagaactagtgagctaacagagcatgcatgagtgaaagaagtattgcaaggaaatcccactcgttgttatgagatgtttcaaatggaaaaacatattt |
23361770 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||| | |||| || || |||| ||||||| | |||| || || || || ||||| |||||||||||||| || | ||||| || || |
|
|
| T |
23361769 |
ttcataaactttgcactaaattagttgatcatggtttaaagcccactaatcacataggagtagaagagatggttgcaatgttcttacttgttgttggaca |
23361670 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcat |
270 |
Q |
| |
|
|| || ||||||||||||||||||||||| || ||||| || || || ||||| ||||||| ||||||| |
|
|
| T |
23361669 |
tggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat |
23361600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 35570814 - 35570485
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35570814 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
35570715 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35570714 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
35570615 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35570614 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
35570515 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35570514 |
ttcaaatatattaaacccgaagatcctatg |
35570485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 4345179 - 4345448
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4345179 |
tgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
4345278 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||| | |||| || || |||| ||||||| | |||| ||||| ||||| ||||| |||||||||||||| || | ||||| || || |
|
|
| T |
4345279 |
ttcataaactttgcactaaattagttgatcatggtttaaagcccactaatcatataggggtagaagagatggttgcaatgttcttacttgttgttggaca |
4345378 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcat |
270 |
Q |
| |
|
|| || ||||||||||||||||||||||| || ||||| || || || ||||| ||||||| ||||||| |
|
|
| T |
4345379 |
tggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat |
4345448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 328
Target Start/End: Original strand, 46406837 - 46407006
Alignment:
| Q |
159 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagt |
258 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||||||||||||||||| |||||||| ||| |||||||||| ||| |
|
|
| T |
46406837 |
ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcgagtgagactgttagt |
46406936 |
T |
|
| Q |
259 |
agacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatccta |
328 |
Q |
| |
|
||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46406937 |
agatgttttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta |
46407006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 37637883 - 37638212
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637883 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
37637982 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637983 |
ttcataaactttgccatgaattggtggaatatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
37638082 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37638083 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaaattgtcc |
37638182 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37638183 |
ttcaaatatattaaacccgaagatcctatg |
37638212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 16564719 - 16565048
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16564719 |
tgtagaactagtgagctcacatgtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
16564818 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16564819 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
16564918 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16564919 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacatttttatcgtgtacttcatgcatgccttaagttgtcc |
16565018 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16565019 |
ttcaaatatattaaacccgaagatcctatg |
16565048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 15618029 - 15618353
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||||||||||||||| | |||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
15618029 |
tgtagaaccagtgagctcacatgtcatgcatgtgttcaagaaatattgcaagggatttccactcattattatgagatgtttcgaatggaaaaacatattt |
15618128 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15618129 |
ttcataaactttgcaatgaattgctggaacatgatttaaagtcttctaaacatatg----ttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
15618224 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||| |
|
|
| T |
15618225 |
tggtgtcgatagtagaatgattcaagaaagatttcaacattcgggtgagactgtaagtacacatttccatcgtgtacttcatgcatgccttgagttatcc |
15618324 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15618325 |
ttcaaatatattaaacccgaagatcctat |
15618353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 5 - 330
Target Start/End: Complemental strand, 24037103 - 24036778
Alignment:
| Q |
5 |
gaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttca |
104 |
Q |
| |
|
||||||||||||| || |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
24037103 |
gaactagtgagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaa |
24037004 |
T |
|
| Q |
105 |
taaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggt |
204 |
Q |
| |
|
| | | ||| |||||| || | | || ||||||||| ||||| | ||| ||||||||||||||||||||||||||| || | ||| |||||||| |
|
|
| T |
24037003 |
tctattgtgcactgaattagttaagcttggtttaaagtcatctaatcgaatgacggttgaagaaatggttgcaatgtttttagttgctgttggccacggg |
24036904 |
T |
|
| Q |
205 |
gtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttca |
304 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| | | |
|
|
| T |
24036903 |
gtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatga |
24036804 |
T |
|
| Q |
305 |
aatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
24036803 |
aatatattaaacccgaagatcctatg |
24036778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 22697923 - 22698192
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22697923 |
tgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
22698022 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||| | |||| || || |||| ||||||| | |||| || || ||||| ||||| |||||||||||||| || | ||||| || || |
|
|
| T |
22698023 |
ttcataaactttgcactaaattagttgatcatggtttaaagcccactaatcacataggggtagaagagatggttgcaatgttcttacttgttgttggaca |
22698122 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcat |
270 |
Q |
| |
|
|| || ||||||||||||||||||||||| || ||||| | || || ||||| ||||||| ||||||| |
|
|
| T |
22698123 |
tggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtgagtagacgttttcat |
22698192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 22982451 - 22982338
Alignment:
| Q |
157 |
ggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaa |
256 |
Q |
| |
|
||||| ||||| |||||||||||||| || | ||||| || || || || ||||||||||||||||||||||| || ||||| | || || ||||| | |
|
|
| T |
22982451 |
ggggtagaagagatggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtga |
22982352 |
T |
|
| Q |
257 |
gtagacattttcat |
270 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
22982351 |
gtagacgttttcat |
22982338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 22996038 - 22995925
Alignment:
| Q |
157 |
ggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaa |
256 |
Q |
| |
|
||||| ||||| |||||||||||||| || | ||||| || || || || ||||||||||||||||||||||| || ||||| | || || ||||| | |
|
|
| T |
22996038 |
ggggtagaagagatggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaacacttaggagaaactgtga |
22995939 |
T |
|
| Q |
257 |
gtagacattttcat |
270 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
22995938 |
gtagacgttttcat |
22995925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 9641 - 9312
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9641 |
tgtagaactagtgagctcacaggtcatgcatgggtttaagaaatattgcaagggaatcccactcgttgttatgagatgttttgaatggaaaaacatattt |
9542 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9541 |
ttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
9442 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9441 |
cagtgtcggtaatagaatgattcaagaaagatttcaacatttgggtgagactgtaagtagacatttccatcgtgtacttcatgcatgccttaagttgtcc |
9342 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
9341 |
ttcaaatatattaaacccaaagatcctatg |
9312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 16247687 - 16247359
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
|||||||||||||| | |||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| | |
|
|
| T |
16247687 |
tgtagaactagtgaacccacatgtcatgcatcagttcaagaagtattgcaagggaatcccactcgttgttataagatgtttcaaatgaaaaaacatatat |
16247588 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
16247587 |
ttcataaactttgcaatgaattggtggaacatgatttaaagtcttttaaatatatgggggttgaagaaattgttgcaatgtttttagtcgttgtaagcca |
16247488 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtcc |
300 |
Q |
| |
|
|| ||| ||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16247487 |
cgatgtaggtaatagaataattcaagaaatatttcaacattcgggttagactataagtagacattttcatcg-gtacttcatgcatgccttaagttgtcc |
16247389 |
T |
|
| Q |
301 |
ttcaaatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
16247388 |
ttcaaatatattaaacctgaagatcctatg |
16247359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 330
Target Start/End: Complemental strand, 51126272 - 51125947
Alignment:
| Q |
5 |
gaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttca |
104 |
Q |
| |
|
||||||||||||| || |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
51126272 |
gaactagtgagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaa |
51126173 |
T |
|
| Q |
105 |
taaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggt |
204 |
Q |
| |
|
| | | ||| |||||| || || | || ||||||||| ||||| | ||| ||||||||||| ||||||||||||||| || | ||| ||||||| |
|
|
| T |
51126172 |
tctattgtgcactgaattagttgagcttggtttaaagtcatctaatcgaatgacggttgaagaaacggttgcaatgtttttagttgctgttagccacggg |
51126073 |
T |
|
| Q |
205 |
gtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttca |
304 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| | | |
|
|
| T |
51126072 |
gtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatga |
51125973 |
T |
|
| Q |
305 |
aatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
51125972 |
aatatattaaacccgaagatcctatg |
51125947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 7010844 - 7011113
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7010844 |
tgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttttgagatgtttcgaatggaaaaacatattt |
7010943 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||| | |||| || || |||| ||||||||| |||| || || ||||| ||||| |||||||||||||| || | ||||| || || |
|
|
| T |
7010944 |
ttcataaactttgcactaaattagttgatcatggtttaaagtccactaatcacataggggtagaagagatggttgcaatgttcttacttgttgttggaca |
7011043 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcat |
270 |
Q |
| |
|
|| || ||||||| ||||||||||||||| || ||||| || || || ||||| ||||||| ||||||| |
|
|
| T |
7011044 |
tggagtgggtaataaaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat |
7011113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 7e-77; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 192581 - 192906
Alignment:
| Q |
5 |
gaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttca |
104 |
Q |
| |
|
||||||||||||| || |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
192581 |
gaactagtgagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaa |
192680 |
T |
|
| Q |
105 |
taaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggt |
204 |
Q |
| |
|
| | | ||| |||||| || || | || ||||||||| ||||| | ||| ||||||||||| ||||||||||||||| || | ||| ||||||| |
|
|
| T |
192681 |
tctattgtgcattgaattagttgagcttggtttaaagtcatctaatcgaatgacggttgaagaaacggttgcaatgtttttagttgctgttagccacggg |
192780 |
T |
|
| Q |
205 |
gtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttca |
304 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| | | |
|
|
| T |
192781 |
gtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatga |
192880 |
T |
|
| Q |
305 |
aatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
192881 |
aatatattaaacccgaagatcctatg |
192906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 720185 - 720510
Alignment:
| Q |
5 |
gaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttca |
104 |
Q |
| |
|
||||||||||||| || |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
720185 |
gaactagtgagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaa |
720284 |
T |
|
| Q |
105 |
taaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggt |
204 |
Q |
| |
|
| | | ||| |||||| || || | || ||||||||| ||||| | ||| ||||||||||| ||||||||||||||| || | ||| ||||||| |
|
|
| T |
720285 |
tctattgtgcattgaattagttgagcttggtttaaagtcatctaatcgaatgacggttgaagaaacggttgcaatgtttttagttgctgttagccacggg |
720384 |
T |
|
| Q |
205 |
gtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttca |
304 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| | | |
|
|
| T |
720385 |
gtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatga |
720484 |
T |
|
| Q |
305 |
aatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
720485 |
aatatattaaacccgaagatcctatg |
720510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 881292 - 881617
Alignment:
| Q |
5 |
gaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttca |
104 |
Q |
| |
|
||||||||||||| || |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
881292 |
gaactagtgagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaa |
881391 |
T |
|
| Q |
105 |
taaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggt |
204 |
Q |
| |
|
| | | ||| |||||| || || | || ||||||||| ||||| | ||| ||||||||||| ||||||||||||||| || | ||| ||||||| |
|
|
| T |
881392 |
tctattgtgcattgaattagttgagcttggtttaaagtcatctaatcgaatgacggttgaagaaacggttgcaatgtttttagttgctgttagccacggg |
881491 |
T |
|
| Q |
205 |
gtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttca |
304 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| | | |
|
|
| T |
881492 |
gtaggtaatagaatgattcaagaaaggtttcaacactcgggtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatga |
881591 |
T |
|
| Q |
305 |
aatatattaaacccgaagatcctatg |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
881592 |
aatatattaaacccgaagatcctatg |
881617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 19647383 - 19647652
Alignment:
| Q |
1 |
tgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatattt |
100 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
19647383 |
tgtagaactagtgagctaatagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttataagatgtttcgaatggaaaaatatattt |
19647482 |
T |
|
| Q |
101 |
ttcataaactttgccatgaattggtggaacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggcca |
200 |
Q |
| |
|
|||||||||||||| | |||| || || |||| |||||| | |||| || || ||||| ||||| |||||||||||||| || | ||||| || || |
|
|
| T |
19647483 |
ttcataaactttgcactaaattagttgatcatggtttaaatcccactaatcacataggggtagaagagatggttgcaatgttcttacttgttgttggaca |
19647582 |
T |
|
| Q |
201 |
cggtgtcggtaatagaatgattcaagaaagatttcaacattcgggtgagactgtaagtagacattttcat |
270 |
Q |
| |
|
|| || ||||||||||||||||||||||| || ||||| || || || ||||| ||||||| ||||||| |
|
|
| T |
19647583 |
tggagtgggtaatagaatgattcaagaaaggttccaacactcaggagaaactgtgagtagacgttttcat |
19647652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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