View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17424_high_18 (Length: 237)

Name: NF17424_high_18

Description: NF17424

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17424_high_18

[»] chr1 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 159; E-Value: 8e-85

Query Start/End: Original strand, 15 - 205

Target Start/End: Complemental strand, 35094137 - 35093946

Alignment:

Q	15	cacagataggtgctgttgaaggagtatctacaactagaaaacccnnnnnnn-gacaatataagcagtttagtaaaaatgtacccttgtaaggaaactgcc	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35094137	cacagataggtgctgttgaaggagtatctacaactagaaaacccaaaaaagagacaatataagcagtttagtaaaaatgtacccatgtaaggaaactgcc	35094038	T

Q	114	tgaatctgcagaacaaattatgccatcattaacagatcagataaaggagtagagttaacatctttgcctcaagggtggtggataaggagatc	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35094037	tgaatctgcagaacaaattatgccatcattaacagatcagataaaggagtagagttaacatctttgcctcaagggtggtggataaggagatc	35093946	T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 121 - 209

Target Start/End: Complemental strand, 32586517 - 32586429

Alignment:

Q	121	gcagaacaaattatgccatcattaacagatcagataaaggagtagagttaacatctttgcctcaagggtggtggataaggagatcaggg	209	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|
T	32586517	gcagaacaaattatggcagtgttaacagataagatgaaagagtagaatcaacatatttgcctcaagagttgtggatagggagatgaggg	32586429	T

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