View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_high_3 (Length: 427)
Name: NF17424_high_3
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 26 - 400
Target Start/End: Original strand, 35636209 - 35636584
Alignment:
| Q |
26 |
actaaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaatacatatcagatcaatagcatatcattatcaaatatgtatcaccaata |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35636209 |
actaaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaatacatatcagatcaatagcatatcaatatcaaatatgtatcaccaata |
35636308 |
T |
|
| Q |
126 |
tgtaacaagataacattataaaagtcataaaccaatatcagatcaaattaaatttgttaaaagt-aaaacataataccgtaatgatgcctttaacgcgcc |
224 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35636309 |
tgtatcaagataacattataaaagtcataaaccaatatcagatcaaattaaatttgttaaaagtaaaaacataataccgtaatgatgcctttaacgcgcc |
35636408 |
T |
|
| Q |
225 |
acgctcccctctcatacgtcacaattgtaggatcttcatgatgctttgcctggagttcttctctaatagctacatcattacaattgtgatctcttgtcaa |
324 |
Q |
| |
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|| || ||||||||||| ||||||| |||| ||| ||| |||||| || | |||||||| |||||||||| |||| ||||||||||||||||||||||| |
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| T |
35636409 |
acacttccctctcatacatcacaatggtagtatcatcaggatgctctgacatgagttcttttctaatagcttcatctttacaattgtgatctcttgtcaa |
35636508 |
T |
|
| Q |
325 |
ctgctcagcatggatttcgttattaaccatagtaccaattacagcacgcgaatctccaagattcgcaacatgtagc |
400 |
Q |
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| T |
35636509 |
ctgctcagcttggatcttattattaaccatagtaccaattacagcacgcgaatctccaagattcgcaacatgtagc |
35636584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 174 - 414
Target Start/End: Original strand, 35629908 - 35630147
Alignment:
| Q |
174 |
taaatttgttaaaagtaaaacataataccgtaatgatgcctttaacgcgccacgctcccctctcatacgtcacaattgtaggatcttcatgatgctttgc |
273 |
Q |
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| T |
35629908 |
taaatttgt-aaaagaaaaacaaaataccgaaatgatgcctttaacgcgccacactccattcttttccttcacaatggtaggatcaccaggatgcattga |
35630006 |
T |
|
| Q |
274 |
ctggagttcttctctaatagctacatcattacaattgtgatctcttgtcaactgctcagcatggatttcgttattaaccatagtaccaattacagcacgc |
373 |
Q |
| |
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|| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
35630007 |
cttgagttcttctctaatagctggatcactacaattgtgatctcttgtcaactgctcagcacggattctcttattaaccatagtaccaattacagcacgt |
35630106 |
T |
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| Q |
374 |
gaatctccaagattcgcaacatgtagccccccttcccatat |
414 |
Q |
| |
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|||||||||||||| |||||||||||| ||||| |||||| |
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| T |
35630107 |
gaatctccaagatttgcaacatgtagcgtccctttccatat |
35630147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 35629795 - 35629851
Alignment:
| Q |
28 |
taaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaatacatat |
84 |
Q |
| |
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|||||||| |||| |||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
35629795 |
taaattcaagccttttcagatatgtatcaccaatacttctactaacctaataaatat |
35629851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 35633203 - 35633258
Alignment:
| Q |
314 |
tctcttgtcaactgctcagcatggatttcgttattaaccatagtaccaattacagc |
369 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
35633203 |
tctcttgtcaattgctcagcatggattttcctattaaccatagtaccaatcacagc |
35633258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 35632949 - 35633005
Alignment:
| Q |
28 |
taaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaatacatat |
84 |
Q |
| |
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||||||||||||| |||||||||| |||||||||| ||||||| |||| ||| |||| |
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| T |
35632949 |
taaattcaggccttttcaaatatgcatcaccaatagttctactgacctgataaatat |
35633005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 199 - 399
Target Start/End: Complemental strand, 10336466 - 10336266
Alignment:
| Q |
199 |
taccgtaatgatgcctttaacgcgccacgctcccctctcatacgtcacaattgtaggatcttcatgatgctttgcctggagttcttctctaatagctaca |
298 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||| | |||| |||||| ||||||| ||| ||||| ||||| ||||||||||||||||||| || |
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| T |
10336466 |
taccgtaatgaagcctttaacacgccacgatccattatcatttatcacaacgttaggatcatcaggatgcattgccctgagttcttctctaatagcttca |
10336367 |
T |
|
| Q |
299 |
tcattacaattgtgatctcttgtcaactgctcagcatggatttcgttattaaccatagtaccaattacagcacgcgaatctccaagattcgcaacatgta |
398 |
Q |
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|
||||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
10336366 |
tcattacaattgtgatctcttgttaactgctcagcacggatctttttattaaccatagtaccaattacaacccgcgaatctccaagatttgcaacatgta |
10336267 |
T |
|
| Q |
399 |
g |
399 |
Q |
| |
|
| |
|
|
| T |
10336266 |
g |
10336266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 199 - 399
Target Start/End: Complemental strand, 10319351 - 10319151
Alignment:
| Q |
199 |
taccgtaatgatgcctttaacgcgccacgctcccctctcatacgtcacaattgtaggatcttcatgatgctttgcctggagttcttctctaatagctaca |
298 |
Q |
| |
|
||||||||||| ||||||||| ||||||| || | |||| |||||| ||||||| ||| ||||| ||||| ||||||||||||||||||| || |
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| T |
10319351 |
taccgtaatgaagcctttaacacgccacgaaccattatcatttatcacaacgttaggatcatcaggatgcattgccctgagttcttctctaatagcttca |
10319252 |
T |
|
| Q |
299 |
tcattacaattgtgatctcttgtcaactgctcagcatggatttcgttattaaccatagtaccaattacagcacgcgaatctccaagattcgcaacatgta |
398 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
10319251 |
tcattacaattgtgatctcttgttaactgctcagcacggatctttttattaaccatagtaccaattacaacccgcgaatctccaagatttgcaacatgta |
10319152 |
T |
|
| Q |
399 |
g |
399 |
Q |
| |
|
| |
|
|
| T |
10319151 |
g |
10319151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 199 - 399
Target Start/End: Complemental strand, 10298919 - 10298719
Alignment:
| Q |
199 |
taccgtaatgatgcctttaacgcgccacgctcccctctcatacgtcacaattgtaggatcttcatgatgctttgcctggagttcttctctaatagctaca |
298 |
Q |
| |
|
||||||||||| ||||||||| ||||||| || | |||| |||||| ||||||| ||| ||||| ||||| ||||||||||||||||||| || |
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| T |
10298919 |
taccgtaatgaagcctttaacacgccacgaaccattatcatttatcacaacgttaggatcatcaggatgcattgccctgagttcttctctaatagcttca |
10298820 |
T |
|
| Q |
299 |
tcattacaattgtgatctcttgtcaactgctcagcatggatttcgttattaaccatagtaccaattacagcacgcgaatctccaagattcgcaacatgta |
398 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||| |||| | |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
10298819 |
tcattacaattgtgatctcttgttaactgctcggcacggatctttttattaaccatagtaccaattacaacgcgcgaatctccaagatttgcaacatgta |
10298720 |
T |
|
| Q |
399 |
g |
399 |
Q |
| |
|
| |
|
|
| T |
10298719 |
g |
10298719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 414
Target Start/End: Complemental strand, 10338171 - 10338100
Alignment:
| Q |
343 |
gttattaaccatagtaccaattacagcacgcgaatctccaagattcgcaacatgtagccccccttcccatat |
414 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
10338171 |
gttattaaccttaatacaaattacagcacgcgaatctccaagattcgcaatatgtagcgtccctttccatat |
10338100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 10338418 - 10338362
Alignment:
| Q |
28 |
taaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaatacatat |
84 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
10338418 |
taaattcaggcattttcaaatatgcatcaccaatagttctactaacctaataaatat |
10338362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 10336598 - 10336549
Alignment:
| Q |
28 |
taaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaa |
77 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
10336598 |
taaattcagacctcttcagatatgcatcaccaatagctctactaacctaa |
10336549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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