View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_1 (Length: 718)
Name: NF17424_low_1
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 172 - 702
Target Start/End: Complemental strand, 8926063 - 8925533
Alignment:
| Q |
172 |
cacttcaatattcagctatatatgaatgagagagtatatgctgtgaggagtgcgattcttaaggtgcaatgtaatgtatttataggcatccaacttgaag |
271 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926063 |
cacttcaatattcagctatatgtgaatgagag--tatatgctgtgaggagtgcgattcttaaggtgcaatgtaatgtatttataggcatccaacttgaag |
8925966 |
T |
|
| Q |
272 |
gaatggttaagaatggaaaaactatttatttaattaacaaaagtattgtattattgtcacaaattctaatgtgtatatatgcatcaagaggataattctt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8925965 |
gaatggttaagaatggaaaaactatttatttaattaacaaaagtattgtattattgtcacaaattctaatgtgtatatatgcatcaagaggataattctt |
8925866 |
T |
|
| Q |
372 |
acaaattaatagactaatatagtaatacaaaacataaaacaaatgcaaatgaattgacttagtataaaataaaataattcttacatatatttgatgccta |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8925865 |
acaaattaatagactaatatagtaatacaaaacataaaacaaatgcaaatgaattgatttagtataaaataaaataattcttacatatatttgatgccta |
8925766 |
T |
|
| Q |
472 |
taaatgactggatttagttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgttcat--aaacaattataaag |
569 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
8925765 |
taaatgactggattttgttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgtccataaaaacaattataaag |
8925666 |
T |
|
| Q |
570 |
aaacaaataatgttttttattataaaatatatcatgcaattcattaatcatattaaatattttttccacctatgtagtccaacttaactaaagagataag |
669 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8925665 |
aaacaaataatgttttttattataaaatatatcatgcaatacattaatcatattaaatattttttccacctatgtagtccgacttaactaaagagataag |
8925566 |
T |
|
| Q |
670 |
tctttgtaattgtccgcatgtcatccagttcat |
702 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
8925565 |
tctttgtagttgtccgcatgtcatccagttcat |
8925533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 8926217 - 8926113
Alignment:
| Q |
18 |
actagcacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactg |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926217 |
actagtacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactg |
8926118 |
T |
|
| Q |
118 |
gaaag |
122 |
Q |
| |
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||||| |
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|
| T |
8926117 |
gaaag |
8926113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 55522810 - 55522713
Alignment:
| Q |
24 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactggaaa |
121 |
Q |
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||||||||||| ||||| || |||||||||||||| || ||||||||||| | | | ||||||| |||||||| ||| ||||||||| |||||||| |
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| T |
55522810 |
acctcaaagaaaccccaattttcacaagcatcttttatgatctccatggttgatgctttctcttcagtgttaagattcttcatgtcaactactggaaa |
55522713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 37628757 - 37628696
Alignment:
| Q |
24 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctc |
85 |
Q |
| |
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||||||||||| |||||||| ||||||||||| ||||| ||||||| |||||||||||||| |
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|
| T |
37628757 |
acctcaaagaatccccagttttcacaagcatccttgattttctccatagtagcttttctctc |
37628696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 36872707 - 36872765
Alignment:
| Q |
24 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttct |
82 |
Q |
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||||||||||| ||||| |||||||||||||| || || ||||||||||| ||||||| |
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| T |
36872707 |
acctcaaagaatccccaattctcacaagcatccttaattttctccatggtatcttttct |
36872765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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