View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_10 (Length: 356)
Name: NF17424_low_10
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 38712869 - 38712542
Alignment:
| Q |
18 |
tattagttattgtaaatttgtaaccaaactttttggtcaagaatcaagatagttaacttaccattcggtgtctactctcctcttgatgaactcatccaca |
117 |
Q |
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| T |
38712869 |
tattagttattgtaaatttgtaaccaaactttttggtcaaga-------tagttaacttaccattcggtgtctactctcctcttgatgaactcatccaca |
38712777 |
T |
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| Q |
118 |
acctgcaaataataatgttttcccatcataaagacttggacgcatcaaactgaaagaacagcatataatagccatatataatttgagcactatttgcaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38712776 |
acctgcaaataataatgttttcccatcataaagacttggacgcatcaaactgaaagaacagcatataatagccatatataatttgagcactatttgcaca |
38712677 |
T |
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| Q |
218 |
aatgttgctgattgtccacaccagaaaactaattacgctacataatttcacgataagtatgacaaactagaatttattagtttaatgatgaaaaataaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38712676 |
aatgttgctgattgtccacaccagaaaactaattacgctacataatttcacgataagtatgacaaactagaatttattagtttaatgatgaaaaataaaa |
38712577 |
T |
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| Q |
318 |
ttgattagtctgtcaatcactttggctctgtgctc |
352 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
38712576 |
ttgattagtctgtcaatcactttggctctgagctc |
38712542 |
T |
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