View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_12 (Length: 350)
Name: NF17424_low_12
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 28471070 - 28470749
Alignment:
| Q |
18 |
cttagaagcaatggtgtatttgttcatcaatggtggaatactcatgaattgcatcaaaggtctaatgtttgagaaattgtatctgg-tttttgtgtttga |
116 |
Q |
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| T |
28471070 |
cttagaagcaatggtgtctttgttcatcaatggtggaatactcatgaattgcatcaaaggtctaatgtttgagaaattgtatctgggtttttgtgtttga |
28470971 |
T |
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| Q |
117 |
agcattgtttacagaacaaatatctagtagaatggattttgttttgttttctattttggaaaataggattttaatgctattgtcatgactatgcaagcat |
216 |
Q |
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| T |
28470970 |
agcattgtttacagaacaaatatctagtagaatggattttgttttgttttctattttggaaaataggattttaatgctattgtcatgactatgcaagcat |
28470871 |
T |
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| Q |
217 |
gaacatcttcatggtttgtaatttgagtgagtaattgtaaaaaactttttcttacctccattaattctttttatgctggtttgatgtttgtttttatttt |
316 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28470870 |
gaacatcttcatggtttgtaatttgagtgaataattgtaaaaaactttttcttaccttcattaattctttttatgctggtttgatgtttgtttttattt- |
28470772 |
T |
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| Q |
317 |
ctcttagttaattatattcttgga |
340 |
Q |
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|||||||||||||| || ||||| |
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| T |
28470771 |
-tcttagttaattattttgttgga |
28470749 |
T |
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