View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17424_low_16 (Length: 336)
Name: NF17424_low_16
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 12007479 - 12007198
Alignment:
| Q |
18 |
acatatggtatctaaacttcaatattatattttggcttgagatctttgtttcacttccatgtgcctttctttcactgtaggcaatcctttcacggttctg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12007479 |
acatatggtatctaaacttcaatattatattttggcttgagatctttgtttcacttccatgggcctttctttcactgtaggcaatcctttcacggttctg |
12007380 |
T |
|
| Q |
118 |
ccgagaatgaatctcctcatgtgagattttacatgagatatagaagtgtgatctcacaccattaaagaagaacgttaaaactaggtaatgctccattcct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
12007379 |
ccgagaatgaatctcctcatgtgagattttacatgagatatagaagagtgatctcacaccattaaagaagaaagttaaaactagttaatgctccattcca |
12007280 |
T |
|
| Q |
218 |
aatcaatttaacgcataccgcaaaccaacatgactaattccatcactagaaacaacttgcttcagctacacgtcacaggttct |
300 |
Q |
| |
|
||||||||||| || ||| ||||| ||||| ||||||||||||| ||||||| || ||||||||||||||| | ||||||||| |
|
|
| T |
12007279 |
aatcaatttaatgcctactgcaaaacaacaagactaattccatctctagaaa-aatttgcttcagctacacataacaggttct |
12007198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 101 - 288
Target Start/End: Complemental strand, 11988579 - 11988390
Alignment:
| Q |
101 |
atcctttcacggttctgccgagaatgaatctcctcatgtgagattttacatgagatatagaagtgtgatctcacaccattaaagaagaacgttaaaacta |
200 |
Q |
| |
|
|||||||||||||||| |||||| |||||| |||||||||||||| || |||| | | ||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
11988579 |
atcctttcacggttctaccgaga-tgaatcccctcatgtgagattctaaatgacagagagaagtgtgatctcacaacattaaagaagagagttaaaacta |
11988481 |
T |
|
| Q |
201 |
ggtaatgctccattcctaatcaatttaacgcataccgcaaaccaacatgactaattc---catcactagaaacaacttgcttcagctacac |
288 |
Q |
| |
|
||| |||| ||||||||||||||||||| || | | ||||||||||||||| ||||| |||||||| ||| |||||||||||||||||| |
|
|
| T |
11988480 |
ggtgatgcaccattcctaatcaatttaatgcttcctgcaaaccaacatgacaaattccatcatcactataaagaacttgcttcagctacac |
11988390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 12019935 - 12019857
Alignment:
| Q |
210 |
ccattcctaatcaatttaacgcataccgcaaaccaacatgactaattccatcactagaaacaacttgcttcagctacac |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12019935 |
ccattcctaatcaatttaacgcataccgcaaaccaacatgactaattccatcactagaaacaacttgcttcagctacac |
12019857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 11988637 - 11988578
Alignment:
| Q |
18 |
acatatggtatctaaacttcaatattatattttggcttgagatctttgtttcacttccat |
77 |
Q |
| |
|
||||||||||||| | ||||| | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11988637 |
acatatggtatctgatcttcagtcttatattttggctagagatctttgtttcacttccat |
11988578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 25 - 300
Target Start/End: Original strand, 29422168 - 29422432
Alignment:
| Q |
25 |
gtatctaaacttcaatattatattttggcttgagatctttgtttcacttccatgtgcctttctttcactgtaggcaatcctttcacggttctgccgagaa |
124 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||| |
|
|
| T |
29422168 |
gtatctaatcttcaatattatattttggct-gagatctttgtttcacttctgcaggcctttctttcactgtaggcaa-------acggttctactgagaa |
29422259 |
T |
|
| Q |
125 |
tgaatctcctcatgtgagattttacatgagatatagaagtgtgatctcacaccattaaagaagaacgttaaaa-ctaggtaatgctccattcctaatcaa |
223 |
Q |
| |
|
|||||| |||| |||||||||||||||||| | ||||||||||| |||||| | ||||||| ||||||| ||||| |||||||||| | ||||| |
|
|
| T |
29422260 |
tgaatcccctc--gtgagattttacatgagagggaaaagtgtgatcttacaccaatgaagaagagagttaaaaactaggcgatgctccatttcggatcaa |
29422357 |
T |
|
| Q |
224 |
tttaacgcataccgcaaaccaacatgactaattccatcactagaaacaacttgcttcagctacacgtcacaggttct |
300 |
Q |
| |
|
|||||||| | ||||||| |||||||||||| |||||||||| ||||||||| |||||||||| ||| ||||||| |
|
|
| T |
29422358 |
tttaacgcttcccgcaaatcaacatgactaaatccatcactacaaacaactt--ttcagctacaaatcaaaggttct |
29422432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 284
Target Start/End: Complemental strand, 29474364 - 29474104
Alignment:
| Q |
25 |
gtatctaaacttcaatattatattttggcttg-agatctttgtttcacttccatgtgcctttctttcactgtaggcaatcctttcacggttctgccgaga |
123 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| | |||||| ||| ||||| |||||| | |||| |
|
|
| T |
29474364 |
gtatctgatcttcaatattatattttggcttggagatctttgtttcactttcgtgtgcctttctttcgccgtaggctatcttttcatggttctactgaga |
29474265 |
T |
|
| Q |
124 |
atgaatctcctcatgtgagattttacatgagatatagaagtgtgatctcacaccattaaagaagaacgttaaaactaggtaatgctccattcctaatcaa |
223 |
Q |
| |
|
|| |||| ||||| ||||||||||| | |||| |||||| |||||| ||||||| || |||| ||||||||| | |||||||| | || | |
|
|
| T |
29474264 |
ataaatcccctcaagtgagattttatacgagagggagaagtaagatctcgcaccattcaaaaagagacataaaactagatgatgctccaactgtgatata |
29474165 |
T |
|
| Q |
224 |
tttaacgcataccgcaaaccaacatgactaattccatcactagaaacaacttgcttcagct |
284 |
Q |
| |
|
||||||| | ||||||||||| |||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
29474164 |
tttaacgtttcccgcaaaccaaaatgactgattccaccactagaaacaacctgcttcagct |
29474104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 29444433 - 29444299
Alignment:
| Q |
166 |
tgatctcacaccattaaagaagaacgttaaaactaggtaatgctccattcctaatcaatttaacgcataccgcaaaccaacatgactaattccatcacta |
265 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||| ||||||||||||| ||||||| ||||| | |||| || |||||||||||| ||||||| || |
|
|
| T |
29444433 |
tgatctcacaccattcaagaagagatataaaaccaggtgatgctccattcctgatcaattcaacgcttcccgcgaatcaacatgactaaatccatcatta |
29444334 |
T |
|
| Q |
266 |
gaaacaacttgcttcagctacacgtcacaggttct |
300 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
29444333 |
gaaacaacttgcttcagctacgcatcaaaggttct |
29444299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 29454398 - 29454318
Alignment:
| Q |
208 |
ctccattcctaatcaatttaacgcataccgcaaaccaacatgactaattccatcactagaaacaacttgcttcagctacac |
288 |
Q |
| |
|
|||||||||| ||||||||||| | | ||| | |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29454398 |
ctccattcctgatcaatttaactcttcccggacaccaacatgactaaatccatcactagaaacaacttgcttcagctacac |
29454318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 284
Target Start/End: Complemental strand, 29469194 - 29468990
Alignment:
| Q |
80 |
gcctttctttcactgtaggcaatcctttcacggttctgccgagaatgaatctcctcatgtgagattttacatgagatatagaagtgtgatctcacaccat |
179 |
Q |
| |
|
||||||||||| | |||||| ||||||||| |||||| | |||||| |||| ||||| ||||||||||| | |||| |||||| |||||| |||||| |
|
|
| T |
29469194 |
gcctttctttcgccgtaggctatcctttcatggttctactgagaataaatcccctcaagtgagattttatacgagagggagaagtaagatctcgcaccat |
29469095 |
T |
|
| Q |
180 |
taaagaagaacgttaaaactaggtaatgctccattcctaatcaatttaacgcataccgcaaaccaacatgactaattccatcactagaaacaacttgctt |
279 |
Q |
| |
|
| || |||| ||||||||| | |||||||| | || |||||| | | ||||||||||| |||||| |||||| ||||||||||||| ||||| |
|
|
| T |
29469094 |
tcaaaaagagacataaaactagatgatgctccaactgtgatatatttaaggtttcccgcaaaccaaaatgactgattccaccactagaaacaacctgctt |
29468995 |
T |
|
| Q |
280 |
cagct |
284 |
Q |
| |
|
||||| |
|
|
| T |
29468994 |
cagct |
29468990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 29473575 - 29473526
Alignment:
| Q |
25 |
gtatctaaacttcaatattatattttggctt-gagatctttgtttcactt |
73 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29473575 |
gtatctgatcttcaatattatattttggcttggagatctttgtttcactt |
29473526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University