View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_19 (Length: 308)
Name: NF17424_low_19
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 35365716 - 35365995
Alignment:
| Q |
17 |
cttagttggcttgatatggggatgaatcaaatatatggagccatacctaaaggaattggacaacttaccggtttaacatacttagacataggaaacaatt |
116 |
Q |
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| T |
35365716 |
cttagttggcttgatatggggatgaatcaaatatatggagccatacctaaaggaattggacaacttaccggtttaacatacttagacataggaaacaatt |
35365815 |
T |
|
| Q |
117 |
tccttgagggaacaataccaaattcaattggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaatagtat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35365816 |
tccttgagggaacaataccaaattcaattggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaatagtat |
35365915 |
T |
|
| Q |
217 |
tggcaatcttactatgttgtctgaactatatttgaatagaaataaatttcaaggaagcattccatttaccctgagatatt |
296 |
Q |
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| T |
35365916 |
tggcaatcttactatgttgtctgaactatatttgaatagaaataaatttcaaggaagcattccatttaccctgagatatt |
35365995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 247
Target Start/End: Original strand, 35753694 - 35753900
Alignment:
| Q |
41 |
aatcaaatatatggagccatacctaaaggaattggacaacttaccggtttaacatacttagacataggaaacaatttccttgagggaacaataccaaatt |
140 |
Q |
| |
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|||||||||||||| | |||||| | |||||||||||| || |||||| | | |||||| || || ||||||||||||||||| |||| ||||||| |
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| T |
35753694 |
aatcaaatatatggggagatacctggaacaattggacaactaactggtttatctttcttagatattgggtacaatttccttgagggaccaattccaaatt |
35753793 |
T |
|
| Q |
141 |
caattggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaatagtattggcaatcttactatgttgtctga |
240 |
Q |
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||||||||||| | || |||||||| | |||| | ||| | | |||||||| | || |||| |||| ||||||||| ||||||||||| |||||||| |
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| T |
35753794 |
caattggaaagcttaaaaatctagtaagattggtattgcaaaataacaaattttccagttatatacctactagtattggaaatcttactatcttgtctga |
35753893 |
T |
|
| Q |
241 |
actatat |
247 |
Q |
| |
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||||||| |
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| T |
35753894 |
actatat |
35753900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 286
Target Start/End: Original strand, 35405473 - 35405714
Alignment:
| Q |
45 |
aaatatatggagccatacctaaaggaattggacaacttaccggtttaacatacttagacataggaaacaatttccttgagggaacaataccaaattcaat |
144 |
Q |
| |
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|||||||||||| ||||| || |||||| |||||| | |||||||| ||||| ||| ||| |||||||| ||||||||||||| ||| ||||||| |
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| T |
35405473 |
aaatatatggagtgataccggaaagaattgaacaactaatcggtttaattgacttaaccattggatacaatttctttgagggaacaattccagattcaat |
35405572 |
T |
|
| Q |
145 |
tggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaatagt-attggcaatcttactatgttgtctgaact |
243 |
Q |
| |
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||||||| | || ||| | | | |||| ||||| | |||||||||| ||||| ||||| |||| | ||||||||||||||| ||||||||||||| |
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|
| T |
35405573 |
tggaaagcttaaaaatttgggaatattgggcttggatggtaacaaattatccggtaacattcc-aataatcattggcaatcttactttgttgtctgaact |
35405671 |
T |
|
| Q |
244 |
atatttgaatagaaataaatttcaaggaagcattccatttacc |
286 |
Q |
| |
|
| | | || ||||||||| |||||||||||||||||||| |
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|
| T |
35405672 |
aggtctatctaataataaatttgaaggaagcattccatttacc |
35405714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 35435962 - 35436089
Alignment:
| Q |
113 |
aatttccttgagggaacaataccaaattcaattggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaata |
212 |
Q |
| |
|
|||||||| ||||||||||| ||| |||||||||||||| | | |||||||| | ||| | ||| |||||||| ||||| ||| || ||||||| | |
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| T |
35435962 |
aatttcctagagggaacaattccagattcaattggaaagcttacgaatctagtaagattaattttgcaagaaaacagattatctggcaagattcctattg |
35436061 |
T |
|
| Q |
213 |
gtattggcaatcttactatgttgtctga |
240 |
Q |
| |
|
||||||||||||||| | ||||||||| |
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| T |
35436062 |
ttattggcaatcttaccaagttgtctga |
35436089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 13564226 - 13564443
Alignment:
| Q |
25 |
gcttgatatggggatgaatcaaatatatggagccatacctaaaggaattggacaacttaccggtttaacatacttagacataggaaacaatttccttgag |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| |||| ||| || ||||| | ||||||||| | |||| | || |||||||||||||||||| |
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| T |
13564226 |
gcttgatatggggcataatcaaatatatggagtgataccaaaag-aataggtcaactaatcggtttaacttccttaaagattggaaacaatttccttgag |
13564324 |
T |
|
| Q |
125 |
ggaacaataccaaattcaattggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaatagtattggcaatc |
224 |
Q |
| |
|
|||||||| ||| |||||||||||| | | || |||||||| |||||| ||||| |||||||||||||| |||||| ||||||| || ||||||||||| |
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|
| T |
13564325 |
ggaacaattccagattcaattggaatgcttaagaatctagtaaaattggtcttgcaagaaaacaaattatctggtaacattcctactattattggcaatc |
13564424 |
T |
|
| Q |
225 |
ttactatgttgtctgaact |
243 |
Q |
| |
|
||||||| |||| |||||| |
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|
| T |
13564425 |
ttactatcttgtatgaact |
13564443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 41 - 282
Target Start/End: Complemental strand, 29624434 - 29624193
Alignment:
| Q |
41 |
aatcaaatatatggagccatacctaaaggaattggacaacttaccggtttaacatacttagacataggaaacaatttccttgagggaacaataccaaatt |
140 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||| |||| | | |||||| |||||| |||| || ||||||| ||||||||||||||||||| ||| |
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|
| T |
29624434 |
aatcaaatatatggagtcatacctgaaagaattggagaactaatcaatttaacttacttaaacatcggcaacaattaccttgagggaacaataccatatt |
29624335 |
T |
|
| Q |
141 |
caattggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaatagtattggcaatcttactatgttgtctga |
240 |
Q |
| |
|
||||||||||| | || ||||||| |||| |||| | |||||| ||||||||||| ||||||| |||||||| ||||||||| || |||||||| |
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|
| T |
29624334 |
caattggaaagcttaagaatctaggaggtttgtacttgaaatcaaacaagttatatggtaacattcctactagtattgccaatcttacaatattgtctga |
29624235 |
T |
|
| Q |
241 |
actatatttgaatagaaataaatttcaaggaagcattccatt |
282 |
Q |
| |
|
|||||| | ||| ||||||||| |||||||||||||||| |
|
|
| T |
29624234 |
gctatatctaaatgaaaataaattggaaggaagcattccatt |
29624193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 1153579 - 1153763
Alignment:
| Q |
41 |
aatcaaatatatggagccatacctaaaggaattggacaacttaccggtttaacatacttagacata--ggaaacaatttccttgagggaacaataccaaa |
138 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||||| | |||| |||| |||||| | ||| ||||| |||||||| |||||||| || ||||| |
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|
| T |
1153579 |
aatcaaatatatggagtgataccagaaagaattggacaactaatcggtgtaacttacttaaatatattggaaataatttcctcgagggaacgattccaaa |
1153678 |
T |
|
| Q |
139 |
ttcaattggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaatagtattggcaatc |
224 |
Q |
| |
|
|||||| ||||| || | |||||||| |||||||||| |||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
1153679 |
ttcaatcggaaactt-cagaatctagtacgattgttcttgcagtcaaacaaattatatggtttcattcctaatagtattggaaatc |
1153763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 30661968 - 30662022
Alignment:
| Q |
110 |
aacaatttccttgagggaacaataccaaattcaattggaaagttaaataatctag |
164 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| | || ||||||| |
|
|
| T |
30661968 |
aacaatttccttgagggaacaattccagattcaattggaaagcttaagaatctag |
30662022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 279
Target Start/End: Complemental strand, 10417000 - 10416762
Alignment:
| Q |
41 |
aatcaaatatatggagccatacctaaaggaattggacaacttaccggtttaacatacttagacataggaaacaatttccttgagggaacaataccaaatt |
140 |
Q |
| |
|
|||||||||||||||| |||||| || |||||| ||||| | ||||||| | |||| | || | | ||||||| ||||||||||||| || ||| |
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|
| T |
10417000 |
aatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgcagacaatttatttgagggaacaattcctgatt |
10416901 |
T |
|
| Q |
141 |
caattggaaagttaaataatctagtgaaattgttcttgggagaa-aacaaattatatggtaatattcctaatagt-attggcaatcttactatgttgtct |
238 |
Q |
| |
|
||||||||||| | || ||||||| | |||| ||||| ||| ||| |||| | ||||||||||||| |||| ||||||||||||||| |||||||| |
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|
| T |
10416900 |
caattggaaagcttaagaatctaggaatattgggcttgg-agagtaacgaattctccggtaatattccta-tagtcattggcaatcttactgtgttgtct |
10416803 |
T |
|
| Q |
239 |
gaactatatttgaatagaaataaatttcaaggaagcattcc |
279 |
Q |
| |
|
|||||| || | || | |||||||| ||||||||||||| |
|
|
| T |
10416802 |
gaactagatctatatggtaataaattggaaggaagcattcc |
10416762 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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