View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_2 (Length: 508)
Name: NF17424_low_2
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 33271895 - 33271403
Alignment:
| Q |
1 |
gtaaattcaactacatgattaaccacaatttcaccattttaaatatgaaataaattaatcatcatctactcaactgaactaatcacaaatttgcatttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33271895 |
gtaaattcaactacatgattaaccacaatttcaccattttaaatatgaaataaattaatcatcatctactcaaccgaactaatcacaaatttgcatttga |
33271796 |
T |
|
| Q |
101 |
ttactctaagtgtcaccataaaactaggtggccaagaaacattttgaaaatattgtaacttttgagatataactaatatttgaaaatggaaaaagcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33271795 |
ttactctaagtgtcaccataaaactaggtggccaagaaacattttgaaaatattgtaacttttgtgatataactaatatttgaaaatggaaaaagcaata |
33271696 |
T |
|
| Q |
201 |
attagcaagcataaatagagagggggatttatactcatattcacaggctacatacattccattcccaactttatagattaaccaatctaagagatgccac |
300 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33271695 |
tttagcaagcataaatagagaggtggatttatactcatattcacaggctacatacattccattcccaactttatagattaaccaatctaagagatgccac |
33271596 |
T |
|
| Q |
301 |
aagacacaagcatcctctcagtcatacatagccttcaaagaataatctttgttcagcccctttcaagcaattatccaaatcaaattgacccttgacaaat |
400 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33271595 |
aagacacaagtatcctctcagtcatacatagccttcaaagaataatctttgttcagcccctttcaagcaattatccaaatcaaattgacccttgacaaat |
33271496 |
T |
|
| Q |
401 |
ctagttctgtaaatgtccactgatttgacaattgacatgaatgtacattattaagtaagtactgattcagcttcaagagttcacccaaacact |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33271495 |
ctagttctgtaaatgtccactgatttgacaattgacatgaatgtacattattaagtaagtactgattcagcttcaagagttcacccaaacact |
33271403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 19297030 - 19297000
Alignment:
| Q |
4 |
aattcaactacatgattaaccacaatttcac |
34 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
19297030 |
aattcaactacatgattaaccacaatttcac |
19297000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 472916 - 472887
Alignment:
| Q |
4 |
aattcaactacatgattaaccacaatttca |
33 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
472916 |
aattcaactacatgattaaccacaatttca |
472887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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