View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17424_low_20 (Length: 300)
Name: NF17424_low_20
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_20 |
 | |
|
| [»] scaffold0428 (3 HSPs) |
| | |
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Alignment Details
Target: scaffold0428 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 2315 - 2594
Alignment:
| Q |
8 |
gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2315 |
gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa |
2414 |
T |
|
| Q |
108 |
ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2415 |
ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga |
2514 |
T |
|
| Q |
208 |
tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2515 |
tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt |
2594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 287
Target Start/End: Complemental strand, 15278 - 15059
Alignment:
| Q |
62 |
aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct |
161 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| || || |||||||| |||||||||| | |
|
|
| T |
15278 |
aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t |
15184 |
T |
|
| Q |
162 |
gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct |
261 |
Q |
| |
|
||| | ||||||||||| ||||| ||| ||||||||||||| | || |||||||||| ||||||| ||| |||||| ||||||||| | || || | |
|
|
| T |
15183 |
agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat |
15085 |
T |
|
| Q |
262 |
tacagtccatcatccctgcacaggtt |
287 |
Q |
| |
|
||||||||||| |||| |||| |||| |
|
|
| T |
15084 |
tacagtccatcgtcccagcaccggtt |
15059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 13896 - 13771
Alignment:
| Q |
61 |
aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc |
160 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| |||||| | |
|
|
| T |
13896 |
aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc |
13798 |
T |
|
| Q |
161 |
tgctagtctcccggatttcttatcagc |
187 |
Q |
| |
|
| || ||| ||||||||||| ||||| |
|
|
| T |
13797 |
ttttaatcttccggatttcttgtcagc |
13771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 33258194 - 33258473
Alignment:
| Q |
8 |
gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33258194 |
gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa |
33258293 |
T |
|
| Q |
108 |
ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33258294 |
ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga |
33258393 |
T |
|
| Q |
208 |
tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33258394 |
tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtt |
33258473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 33414568 - 33414840
Alignment:
| Q |
8 |
gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa |
107 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
33414568 |
gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaa |
33414666 |
T |
|
| Q |
108 |
ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga |
207 |
Q |
| |
|
||||||||||||| ||| |||| || || |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33414667 |
ttagaacaccaatacgtgcatcgtgaatg-tatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcc |
33414765 |
T |
|
| Q |
208 |
tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac |
282 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
33414766 |
tgagatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgcac |
33414840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 31565117 - 31564920
Alignment:
| Q |
32 |
tgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgc |
131 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||||||| || | |||||| ||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
31565117 |
tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt |
31565018 |
T |
|
| Q |
132 |
gagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttca |
230 |
Q |
| |
|
|| || |||||||||||||||||||| | || |||| ||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
31565017 |
gaatg-tatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca |
31564920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 33269541 - 33269740
Alignment:
| Q |
8 |
gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa |
107 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33269541 |
gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaa |
33269639 |
T |
|
| Q |
108 |
ttagaacaccaatgtgtgaatcgcgagtg---atatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttt |
204 |
Q |
| |
|
|||||||||| ||| || || | || || |||||||||||||||| |||| |||||||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
33269640 |
ttagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagaccctttt |
33269739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 138 - 287
Target Start/End: Original strand, 33293102 - 33293251
Alignment:
| Q |
138 |
tatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcac |
237 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| | |||||||||||||||| |||||||||||||||| |||| ||||||| | |||||||||||||| |
|
|
| T |
33293102 |
tatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcaccttttcaagatcac |
33293201 |
T |
|
| Q |
238 |
cttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt |
287 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| |||| |||| |
|
|
| T |
33293202 |
cttctgtttcagcatgagctttcttacagtccatcatcccagcaccggtt |
33293251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 31 - 282
Target Start/End: Original strand, 33395074 - 33395326
Alignment:
| Q |
31 |
ttgcattgcaagatcgtcaaccaactccttaaatttctcacttctg--ccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat |
128 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||||||| |||||| ||| ||| || |
|
|
| T |
33395074 |
ttgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcat |
33395173 |
T |
|
| Q |
129 |
cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt |
228 |
Q |
| |
|
|| | || ||| |||||||||||||||| ||||||| || ||||||||||| ||||| ||||||||||||||| | | || |||| ||| | ||||| |
|
|
| T |
33395174 |
cgtcaatg-tatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggcctttt |
33395272 |
T |
|
| Q |
229 |
caagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcac |
282 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
33395273 |
caagatcacctttagtttcggctaaggctttcttacagtccataatcccagcac |
33395326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 33384049 - 33384148
Alignment:
| Q |
29 |
acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat |
128 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||||| |
|
|
| T |
33384049 |
acttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaat |
33384148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 287
Target Start/End: Original strand, 33278975 - 33279194
Alignment:
| Q |
62 |
aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct |
161 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| || || |||||||| |||||||||| | |
|
|
| T |
33278975 |
aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t |
33279069 |
T |
|
| Q |
162 |
gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct |
261 |
Q |
| |
|
||| | ||||||||||| ||||| ||| ||||||||||||| | || |||||||||| ||||||| ||| |||||| ||||||||| | || || | |
|
|
| T |
33279070 |
agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat |
33279168 |
T |
|
| Q |
262 |
tacagtccatcatccctgcacaggtt |
287 |
Q |
| |
|
||||||||||| |||| |||| |||| |
|
|
| T |
33279169 |
tacagtccatcgtcccagcaccggtt |
33279194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 28873091 - 28872999
Alignment:
| Q |
184 |
cagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatcc |
276 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||| || |||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
28873091 |
cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcc |
28872999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 33406911 - 33407049
Alignment:
| Q |
48 |
caaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccga |
147 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||| ||||| |||| | ||| | | | |||||||||| |
|
|
| T |
33406911 |
caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgcataaattgtcaat-atatgtaccgg |
33407009 |
T |
|
| Q |
148 |
ttcttccttcttctgctagtctcccggatttcttatcagc |
187 |
Q |
| |
|
|| |||| || |||||||||| | ||||||||||||||| |
|
|
| T |
33407010 |
tttttccatcggctgctagtcttctggatttcttatcagc |
33407049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 33280357 - 33280482
Alignment:
| Q |
61 |
aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc |
160 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| |||||| | |
|
|
| T |
33280357 |
aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc |
33280455 |
T |
|
| Q |
161 |
tgctagtctcccggatttcttatcagc |
187 |
Q |
| |
|
| || ||| ||||||||||| ||||| |
|
|
| T |
33280456 |
ttttaatcttccggatttcttgtcagc |
33280482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 17447961 - 17447703
Alignment:
| Q |
29 |
acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat |
128 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||| ||||| |||||||||| |||| ||| ||| || |
|
|
| T |
17447961 |
acttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcat |
17447862 |
T |
|
| Q |
129 |
cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagaga-ccctttttgatgagatatgcttgcggcttt |
227 |
Q |
| |
|
|| || || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||| |
|
|
| T |
17447861 |
cgtgaatg-tatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttgcgccttt |
17447763 |
T |
|
| Q |
228 |
tcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgcacaggtt |
287 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||||||||| ||||| |||| |||| |
|
|
| T |
17447762 |
tcaagatcaccttcagtttcggcaagggctttcttacagtccataatcccagcaccggtt |
17447703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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