View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_21 (Length: 273)
Name: NF17424_low_21
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 24438360 - 24438115
Alignment:
| Q |
14 |
tcattgtattttgcgtgatctaataatccaaagatactgttggaagtattaagaaaattggttaggcaaagtatgcttttcatttgttgtgtatttttaa |
113 |
Q |
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| T |
24438360 |
tcattgtattttgcgtgatctaataatccaaagatactgttggaagtattaagaaaattggttaggcaaagtatgcttttcatttgttgtgtatttttaa |
24438261 |
T |
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| Q |
114 |
tttgtaaaaatagctcttatttacattttgtactatttatcatatttgtaagaatttattccataatgcagtctcacaagttgagcttctaagcttcctc |
213 |
Q |
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| T |
24438260 |
tttgtaaaaatagctcttatttacattttgtaccattgatcatatttgtaagaatttattccataatgcagtctcacaagttgagcttctaagcttcctc |
24438161 |
T |
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| Q |
214 |
tatttttgtaatataatatttcttataccatagggttcattaaatc |
259 |
Q |
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| T |
24438160 |
tatttttgtaatataatatttcttataccatagggttcattaaatc |
24438115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 24463584 - 24463346
Alignment:
| Q |
20 |
tattttgcgtgatctaataatccaaagatactgtt-ggaagtattaagaaaattggttaggcaaagtatgcttttcatttgttgtgtatttttaatttgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
24463584 |
tattttgcgtgatctaataatccaaagatactgttaggaagtaaaaagaaaatttgttaggcataatatgcttttcatttgttgtgtatttgtaatttgt |
24463485 |
T |
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| Q |
119 |
aaaaatagctcttatttacattttgtactatttatcatatttgtaagaattt-attccataatgcagtctcacaagttgagcttctaagcttcctctatt |
217 |
Q |
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| T |
24463484 |
aaaaatagctcgt--ttacattttgtaccattgatcatatttgtaagaattttattccataatgcagtctcacaagttgagcttctaagcttcctcta-t |
24463388 |
T |
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| Q |
218 |
tttgtaatataatatttcttataccatagggttcattaaatc |
259 |
Q |
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| T |
24463387 |
tttgtaatataatatttcttataccatagggttcattaaatc |
24463346 |
T |
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