View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_22 (Length: 272)
Name: NF17424_low_22
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 42530040 - 42529839
Alignment:
| Q |
17 |
caaaaatacaagtagatatacctatgaagttcacaaccataattaaattcaccaannnnnnncatctcgcttctttctaacccaacaattatcctttgta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42530040 |
caaaaatacaagtagatatacctatgaagttcacaaccataa----attcaccaatatttttcatctcgcttctttctaacccaacaattatcctttgta |
42529945 |
T |
|
| Q |
117 |
ctttgttgttgtaaagttgtgcccacattctaattggtcaactaggtagtatatatcagagaatctagtattgtcactcatgtccatacgtcaacaaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529944 |
ctttgttgttgtaaagttgtgcccacattctaattggtcaactaggtagtatatatcagagaatctagtattgtcactcatgtccatacgtcaacaaatt |
42529845 |
T |
|
| Q |
217 |
atatat |
222 |
Q |
| |
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|||||| |
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| T |
42529844 |
atatat |
42529839 |
T |
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