View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17424_low_23 (Length: 257)

Name: NF17424_low_23
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17424_low_23
NF17424_low_23
[»] chr7 (9 HSPs)
chr7 (21-242)||(39541590-39541810)
chr7 (21-242)||(39550848-39551067)
chr7 (21-242)||(39567641-39567858)
chr7 (21-242)||(39360557-39360774)
chr7 (21-242)||(39334749-39334965)
chr7 (21-242)||(39346013-39346223)
chr7 (168-245)||(39577600-39577677)
chr7 (21-98)||(39591925-39592002)
chr7 (21-84)||(39577448-39577511)
[»] chr4 (1 HSPs)
chr4 (22-52)||(2884206-2884236)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 39541590 - 39541810
Alignment:
Q  21 atccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccctacacttatagattcataatatcaatttatttgagat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39541590 atccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccctacacttatagattcataatatcaattta-ttgagat 39541688  T
Q  121 gattaatcacgatccgcgttaatattgaaattggttttgnnnnnnnnacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgcat 220  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39541689 gattaatcacgatccgcgttaatattgaaattggttttgttttttttacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgcat 39541788  T
Q  221 ttcctacaacagtatcagcaca 242  Q
    ||||||||||||||||||||||    
T  39541789 ttcctacaacagtatcagcaca 39541810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 39550848 - 39551067
Alignment:
Q  21 atccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccctacacttatagattcataata-tcaatttatttgaga 119  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| || | |||||||||||||| |||||| ||| ||||    
T  39550848 atccaaaccagtagatatttcatccatgaatagagctttcgccggtccaaccaacatctcccctgcattgatagattcataataatcaattcatt-gaga 39550946  T
Q  120 tgattaatcacgatccgcgttaatattgaaattggttttgnnnnnnnnacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 219  Q
    ||||| || || |||| |||||| | | ||||||| |||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39550947 tgattcataactatccacgttaagacttaaattggattt--ttattttaccagttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 39551044  T
Q  220 tttcctacaacagtatcagcaca 242  Q
    |||||||||||||||||||||||    
T  39551045 tttcctacaacagtatcagcaca 39551067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 39567641 - 39567858
Alignment:
Q  21 atccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccctacacttatagattcataata-tcaatttatttgaga 119  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||| |||||||||||||||| |||||||||| |||     
T  39567641 atccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaacatttctcctacatttatagattcataataatcaatttatt-gagg 39567739  T
Q  120 tgattaatcacgatccgcgttaatattgaaattggttttgnnnnnnnnacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 219  Q
    |||| |||||| ||    ||||||||| ||||  | ||||        ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39567740 tgatcaatcacaatgtctgttaatattcaaatcagatttgtttt----acctgttgtaaggcgtttcttttgtccaccagagatacctcgtaacattgca 39567835  T
Q  220 tttcctacaacagtatcagcaca 242  Q
    |||||||||| ||||||||||||    
T  39567836 tttcctacaatagtatcagcaca 39567858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 39360774 - 39360557
Alignment:
Q  21 atccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccctacacttatagattcataa-tatcaatttatttgaga 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||||||||||||  ||||||||| |||||     
T  39360774 atccaaaccagtagatatttcatccatgaataaagctttagtcggtccaaccaacatctctcctacatttatagattcataacaatcaattta-ttgagt 39360676  T
Q  120 tgattaatcacgatccgcgttaatattgaaattggttttgnnnnnnnnacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 219  Q
    | ||||||||| || |  ||||| ||||||||  | || |        ||||||||||| ||||||||||||||| ||||||||| ||| || |||||||    
T  39360675 taattaatcacaattcatgttaagattgaaatcagattag----ttttacctgttgtaaggcgtttcttttgtccgccagagatagctcttatcattgca 39360580  T
Q  220 tttcctacaacagtatcagcaca 242  Q
    ||||| |||||||||||||||||    
T  39360579 tttcccacaacagtatcagcaca 39360557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 39334965 - 39334749
Alignment:
Q  21 atccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccctacacttatagattcataat-atcaatttatttgaga 119  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||| |||| |||| |||| |||||     
T  39334965 atccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacatctcccctacatttatagattcctaataatcagttta-ttgagg 39334867  T
Q  120 tgattaatcacgatccgcgttaatattgaaattggttttgnnnnnnnnacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 219  Q
    | ||||||||| |  || ||| | ||| ||||  | ||||        ||||||||||| ||||||||||||||| ||||||||||||| || |||||||    
T  39334866 taattaatcacaacgcgtgtt-agatttaaatcagatttg----ttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgca 39334772  T
Q  220 tttcctacaacagtatcagcaca 242  Q
    ||||| |||||||||||||||||    
T  39334771 tttcccacaacagtatcagcaca 39334749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 39346223 - 39346013
Alignment:
Q  21 atccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccctacacttatagattcataata-tcaatttatttgaga 119  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||      ||||||| ||||| ||| |||||| ||      
T  39346223 atccaaaccagtagatatttcatccatgaataaagctttagttggtccaaccaacatctccccta------tagattcctaataatcagtttatt-gacg 39346131  T
Q  120 tgattaatcacgatccgcgttaatattgaaattggttttgnnnnnnnnacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgca 219  Q
    | ||||||||| |  || ||||  ||| ||||  | ||||        ||||||||||| ||||||||||||||| ||||||||||||| || |||||||    
T  39346130 taattaatcacaacgcgtgttag-atttaaatcagatttgtttt----acctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgca 39346036  T
Q  220 tttcctacaacagtatcagcaca 242  Q
    ||||| |||||||||||||||||    
T  39346035 tttcccacaacagtatcagcaca 39346013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 39577600 - 39577677
Alignment:
Q  168 acctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgcatttcctacaacagtatcagcacaggt 245  Q
    |||||| ||||| |||||| ||||||| ||||||||||||| ||||||||||||||| || |||||||| ||||||||    
T  39577600 acctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccaccacagtatctgcacaggt 39577677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 39591925 - 39592002
Alignment:
Q  21 atccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccctacacttatagattc 98  Q
    |||||||||||||||||||||||||||||| ||||| ||||  ||||| || | ||||||||||  | ||||||||||    
T  39591925 atccaaaccagtagatatttcatccatgaaaagagccttagctggtcctaccagcatctcccctgtatttatagattc 39592002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 39577448 - 39577511
Alignment:
Q  21 atccaaaccagtagatatttcatccatgaatagagctttagtcggtccaactaacatctcccct 84  Q
    |||||||||||||||||||||||||||||| ||||| ||||  | ||| |||| ||||||||||    
T  39577448 atccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccct 39577511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 2884236 - 2884206
Alignment:
Q  22 tccaaaccagtagatatttcatccatgaata 52  Q
    |||||||||||||||||||||||||||||||    
T  2884236 tccaaaccagtagatatttcatccatgaata 2884206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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