View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17424_low_4 (Length: 415)

Name: NF17424_low_4
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17424_low_4
NF17424_low_4
[»] chr5 (4 HSPs)
chr5 (1-397)||(656503-656899)
chr5 (42-101)||(12842972-12843031)
chr5 (42-96)||(37022666-37022720)
chr5 (42-93)||(24092098-24092149)
[»] chr4 (5 HSPs)
chr4 (106-188)||(3896085-3896167)
chr4 (108-188)||(3144996-3145076)
chr4 (42-96)||(14027054-14027108)
chr4 (42-96)||(6746689-6746743)
chr4 (49-96)||(8724775-8724822)
[»] scaffold0015 (2 HSPs)
scaffold0015 (42-97)||(29526-29581)
scaffold0015 (42-96)||(24211-24265)
[»] chr8 (4 HSPs)
chr8 (42-97)||(86508-86563)
chr8 (42-97)||(91825-91880)
chr8 (42-97)||(19802979-19803034)
chr8 (42-96)||(29010782-29010836)
[»] chr7 (4 HSPs)
chr7 (42-97)||(11716628-11716683)
chr7 (42-96)||(13167037-13167091)
chr7 (42-95)||(11711383-11711436)
chr7 (42-97)||(13160581-13160636)
[»] chr6 (5 HSPs)
chr6 (42-97)||(16777801-16777856)
chr6 (42-97)||(32703873-32703928)
chr6 (42-96)||(16772466-16772520)
chr6 (42-96)||(32708250-32708304)
chr6 (44-96)||(26243701-26243753)
[»] chr3 (11 HSPs)
chr3 (42-97)||(4100097-4100152)
chr3 (42-97)||(5383349-5383404)
chr3 (42-97)||(6806583-6806638)
chr3 (42-96)||(5378014-5378068)
chr3 (42-96)||(13719155-13719209)
chr3 (42-97)||(13723051-13723106)
chr3 (42-97)||(4099737-4099792)
chr3 (42-96)||(2185446-2185500)
chr3 (45-94)||(23619432-23619481)
chr3 (1-33)||(5378234-5378266)
chr3 (1-33)||(5383570-5383602)
[»] chr1 (15 HSPs)
chr1 (42-97)||(2797004-2797059)
chr1 (42-97)||(14471543-14471598)
chr1 (42-97)||(14476906-14476961)
chr1 (42-97)||(23200390-23200445)
chr1 (42-96)||(2790575-2790629)
chr1 (42-96)||(23202759-23202813)
chr1 (42-96)||(39170182-39170236)
chr1 (42-93)||(42375365-42375416)
chr1 (42-97)||(21010395-21010450)
chr1 (43-96)||(394763-394816)
chr1 (1-33)||(14471763-14471795)
chr1 (1-33)||(14477126-14477158)
chr1 (1-33)||(39169985-39170017)
chr1 (43-94)||(14632655-14632706)
chr1 (61-96)||(42377395-42377430)
[»] chr2 (2 HSPs)
chr2 (42-96)||(20925392-20925446)
chr2 (111-185)||(44046416-44046490)


Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 656899 - 656503
Alignment:
Q  1 tcaaggtcacttacatcatcccttacctcattgnnnnnnnncttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccatggt 100  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  656899 tcaaggtcacttacatcatcccttacctcattgaaaaaaaacttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccatggt 656800  T
Q  101 gtgtatgtaatttgatcagcgaaagcttgctcaaagatcagaaagagtaaattatgtggatctccatccaatagaaccctggtaatactttgcaatcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  656799 gtgtatgtaatttgatcagcgaaagcttgctcaaagatcagaaagagtaaattctgtggatctccatccaacagaaccctggtaatactttgcaatcaat 656700  T
Q  201 gaaagagttgtagaaaatttcaagtttcagctcatttgagcatatactaagtttgagttcaattattgcattcatggattttctttcacacactccattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656699 gaaagagttgtagaaaatttcaagtttcagctcatttgagcatatactaagtttgagttcaattattgcattcatggattttctttcacacactccattt 656600  T
Q  301 atactacagaaatgggttgtgtggacacttgagaaaatatgataggaaaactaactacttactaacatgaaggctttatacaattacattatattca 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  656599 atactacagaaatgggttgtgtggacacttgagaaaatatgataggaaaactaactacttactaacatgaaggctttatacaattacaccatattca 656503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 12842972 - 12843031
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccatggtg 101  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  12842972 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccaaggtg 12843031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 37022720 - 37022666
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  37022720 cttgagtttctcatttgagagttagagagtggattctctcttggtttcttagcca 37022666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 24092149 - 24092098
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgag 93  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  24092149 cttgagtttctcatttgagagttagagagtggattctctcttagtttctgag 24092098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 3896085 - 3896167
Alignment:
Q  106 tgtaatttgatcagcgaaagcttgctcaaagatcagaaagagtaaattatgtggatctccatccaatagaaccctggtaatac 188  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||| |||||| |||||||||    
T  3896085 tgtaatttgatcagcgaaagcttgcgcaaagatcagaaagagtaaagtctgtggatctacatccaacagaaccatggtaatac 3896167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 3145076 - 3144996
Alignment:
Q  108 taatttgatcagcgaaagcttgctcaaagatcagaaagagtaaattatgtggatctccatccaatagaaccctggtaatac 188  Q
    ||||||||||||||||||||||| ||||||||||||||||| || | ||||||||| ||||||| |||||| |||||||||    
T  3145076 taatttgatcagcgaaagcttgcgcaaagatcagaaagagtgaagtctgtggatctacatccaacagaaccatggtaatac 3144996  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 14027054 - 14027108
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14027054 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 14027108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 6746743 - 6746689
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6746743 cttgcgtttctcatttgagagttagagagtggattctctcttggtttctgagcca 6746689  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 8724775 - 8724822
Alignment:
Q  49 ttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||| |||| |||||||||||| || |||||||    
T  8724775 ttctcatttgagagttagatagtggattctctcttggcttttgagcca 8724822  T

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Target: scaffold0015 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 29581 - 29526
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29581 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 29526  T

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Target: scaffold0015; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 24265 - 24211
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24265 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 24211  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 86508 - 86563
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  86508 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 86563  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 91825 - 91880
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  91825 cttgagtttctcatttgagagttagagagtggattctctcttggtttatgagccat 91880  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 19802979 - 19803034
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  19802979 cttgagtttctaatttgagagttagagagtggattctctcttggtttctgagccat 19803034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 29010836 - 29010782
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  29010836 cttgagtttctcatttgagagttagagagtggattctctcttgatttctgagcca 29010782  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 11716628 - 11716683
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11716628 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 11716683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 13167037 - 13167091
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13167037 cttgagtttctcatttgagagttagagagtgaattctctcttgatttctgagcca 13167091  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 11711383 - 11711436
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcc 95  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11711383 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcc 11711436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 13160581 - 13160636
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  13160581 cttgagtttctcatatgagagttagagagtggattctctcttcgtttctgagccat 13160636  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 16777856 - 16777801
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16777856 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 16777801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 32703873 - 32703928
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  32703873 cttgagtttctcatttgagagttatagagtggattctctcttggtttctgagccat 32703928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 16772520 - 16772466
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  16772520 cttgagtttctcatttgagagttagagagtggattctctattggtttctgagcca 16772466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 32708250 - 32708304
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  32708250 cttgagtttctcatttgagagttagagagtggattctctcttagtttctgagcca 32708304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 26243701 - 26243753
Alignment:
Q  44 tgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    |||||||||||||| ||||||||| | |||  |||||||| ||||||||||||    
T  26243701 tgagtttctcatttaagagttagaaaatgaggtctctcttagtttctgagcca 26243753  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 4100097 - 4100152
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4100097 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 4100152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 5383404 - 5383349
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5383404 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 5383349  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 6806638 - 6806583
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6806638 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 6806583  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 5378068 - 5378014
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5378068 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 5378014  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 13719209 - 13719155
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13719209 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 13719155  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 13723106 - 13723051
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  13723106 cttgagtttctcatttgatagttagagagtggattctctcttggtttctgagccat 13723051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 4099792 - 4099737
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  4099792 cttgagtttctcttttgagagttagagagtggattctctcttggtttatgagccat 4099737  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 2185446 - 2185500
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    |||||||||||||||||| ||||||||| || ||||||||||| |||||||||||    
T  2185446 cttgagtttctcatttgaaagttagagaatggattctctcttgatttctgagcca 2185500  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 23619432 - 23619481
Alignment:
Q  45 gagtttctcatttgagagttagagagtgaattctctcttggtttctgagc 94  Q
    ||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  23619432 gagtttctcatttgagagtaatagagtggattctctcttggtttctgagc 23619481  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5378266 - 5378234
Alignment:
Q  1 tcaaggtcacttacatcatcccttacctcattg 33  Q
    |||||||||||||||||||||||||||||||||    
T  5378266 tcaaggtcacttacatcatcccttacctcattg 5378234  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5383602 - 5383570
Alignment:
Q  1 tcaaggtcacttacatcatcccttacctcattg 33  Q
    |||||||||||||||||||||||||||||||||    
T  5383602 tcaaggtcacttacatcatcccttacctcattg 5383570  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 2797059 - 2797004
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2797059 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 2797004  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 14471598 - 14471543
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14471598 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 14471543  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 14476961 - 14476906
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14476961 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 14476906  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 23200390 - 23200445
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23200390 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagccat 23200445  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 2790629 - 2790575
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2790629 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 2790575  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 23202759 - 23202813
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23202759 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 23202813  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 39170182 - 39170236
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39170182 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 39170236  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 42375365 - 42375416
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgag 93  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42375365 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgag 42375416  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 21010450 - 21010395
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagccat 97  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  21010450 cttgagtttctcatttcagagttagagagtggatactctcttggtttctgagccat 21010395  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 394816 - 394763
Alignment:
Q  43 ttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||| | ||| |||||||||||||||||| |||||||||||    
T  394816 ttgagtttctcatttgaaaattacagagtgaattctctcttgatttctgagcca 394763  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14471795 - 14471763
Alignment:
Q  1 tcaaggtcacttacatcatcccttacctcattg 33  Q
    |||||||||||||||||||||||||||||||||    
T  14471795 tcaaggtcacttacatcatcccttacctcattg 14471763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14477158 - 14477126
Alignment:
Q  1 tcaaggtcacttacatcatcccttacctcattg 33  Q
    |||||||||||||||||||||||||||||||||    
T  14477158 tcaaggtcacttacatcatcccttacctcattg 14477126  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39169985 - 39170017
Alignment:
Q  1 tcaaggtcacttacatcatcccttacctcattg 33  Q
    |||||||||||||||||||||||||||||||||    
T  39169985 tcaaggtcacttacatcatcccttacctcattg 39170017  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 14632706 - 14632655
Alignment:
Q  43 ttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagc 94  Q
    ||||||||||||||||| ||||| |||||| |||||||||| |||| |||||    
T  14632706 ttgagtttctcatttgaaagttaaagagtggattctctcttcgtttatgagc 14632655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 42377395 - 42377430
Alignment:
Q  61 agttagagagtgaattctctcttggtttctgagcca 96  Q
    |||||||||||| |||||||||||||||||||||||    
T  42377395 agttagagagtggattctctcttggtttctgagcca 42377430  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 20925446 - 20925392
Alignment:
Q  42 cttgagtttctcatttgagagttagagagtgaattctctcttggtttctgagcca 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20925446 cttgagtttctcatttgagagttagagagtggattctctcttggtttctgagcca 20925392  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 44046416 - 44046490
Alignment:
Q  111 tttgatcagcgaaagcttgctcaaagatcagaaagagtaaattatgtggatctccatccaatagaaccctggtaa 185  Q
    ||||||||||| |||||||| || |||||||||||||| || | ||||||||| |||||||  ||||| ||||||    
T  44046416 tttgatcagcgtaagcttgcgcagagatcagaaagagtgaaatgtgtggatctacatccaactgaaccatggtaa 44046490  T

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