View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_5 (Length: 406)
Name: NF17424_low_5
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 42684449 - 42684083
Alignment:
| Q |
15 |
cagagatgtgttttctcctgcaacgtcggcattttcttagggcgaactttgtgaacaaaacacggtgttattcccataatctatttatttttgtttttag |
114 |
Q |
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| T |
42684449 |
cagagaggtgttttctcctgcaacatcggcattttcttagggcaaactctgtgaacaaaaaacggtgttattcccataatctatttatttttgtttttag |
42684350 |
T |
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| Q |
115 |
tttgattgtttgaaatttcttatgcatatagattctgaatttatctttggttgaatcattatattctggatcatttatagtttggttgtcattattgtta |
214 |
Q |
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| T |
42684349 |
tttgattgtttgaaatttcttatgcatatagattctgaatttatctttggttgaatcattatattctggatcatttatagtttggttgtcattattgtta |
42684250 |
T |
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| Q |
215 |
tttgttcaacttttcttataaaatctaaccatttttacattgttacttttgagttgataataaattagtggtggatagagttttattactcaaattaatg |
314 |
Q |
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| T |
42684249 |
tttgttcaacttttcttataaaatctaactatttttacattgttacttttgagttgataataaattagtggtggatagtgttttattactcaaattaatg |
42684150 |
T |
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| Q |
315 |
gtgaagagtgttataccatgtcaaaccccacttttatagtccgtttgatgggatcaggatagggagaca |
383 |
Q |
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| T |
42684149 |
gtgaagagtgttataccgtgtcaaaccccacttttagggttcgtttgatgg--ttaggatagggagaca |
42684083 |
T |
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