View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_6 (Length: 390)
Name: NF17424_low_6
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 7884405 - 7884010
Alignment:
| Q |
1 |
tgacaacataatacactctaattcacatcataatacactctctatttaacatcatagtcctcctaatcatagtataccctaagagctccaaccgtgaatc |
100 |
Q |
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| T |
7884405 |
tgacaacataatacactctaattcacatcataatacactctctatttaagatcatagtcctcctaatcatagtatacccttagagctccaactgtgaatc |
7884306 |
T |
|
| Q |
101 |
atcgttcccatgtgttcgataacagcttcaaaaccgcaaccttaattctgtttagcctgctctttcaaagaatacacagaaattgtgttaattaattgca |
200 |
Q |
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| T |
7884305 |
atcgttcccatgtgttcgataacagcttcaaaaccgcaaccttaattctgttttgcctgctctttcaaagaatcaacagaaattgtgttaattaattgca |
7884206 |
T |
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| Q |
201 |
tccctcacataatgtttcaatatcaaac-----att----------------ataaaatagaacattcccaaagtataaagatcaagtacataatttaga |
279 |
Q |
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| T |
7884205 |
tccctcacataatgtttcaatatcaaacaagatattagacacacacacacacataaaatagaacattcccaaagtataaagatcaagtacataatttcga |
7884106 |
T |
|
| Q |
280 |
aggaaatgagaattcacctgtgaatagatgaaggtgccaagaattgcaatggcagctccaagagcattgatgggttgaagtggtgtgtgaaagata |
375 |
Q |
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| T |
7884105 |
aggaaatgagaattcacctgtgaatagatgaaggtgccaagaattgcaatggcagctccaagagcattgatgggttgaagtggtgtgtgaaagata |
7884010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 375
Target Start/End: Complemental strand, 54986785 - 54986687
Alignment:
| Q |
276 |
tagaaggaaatgagaattcacctgtgaatagatgaaggtgccaagaattgcaatggcagctccaagagcattgatgggttgaagtggtgtgtgaaagata |
375 |
Q |
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| T |
54986785 |
tagaaggaaaag-gaatgcacctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaattggtgtgtggaagata |
54986687 |
T |
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