View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_7 (Length: 376)
Name: NF17424_low_7
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 41802116 - 41801767
Alignment:
| Q |
1 |
aatcatgttcgccagcataaccattatgcattcattcaatcaatacagttagaaatgaagaaataaaagcatcttgatatgcatacaacttcactatgtg |
100 |
Q |
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| T |
41802116 |
aatcatgttcgccagcataaccattatgcattcattcaatcaatacagttagaaatgaagaaataaaagcatcttgatatgcatacagcttcactatgtg |
41802017 |
T |
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| Q |
101 |
catcaagattcaacggaaaatgagtatctattttgagtgagacacatgccaaatactgggagatgtgcaaccagccaaccatgatagaaagaagcaaaga |
200 |
Q |
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| T |
41802016 |
catcaagattcaacggaaaatgagtatctattttgagtgagaaacatgccaaatactgggagatgtgcaacca--------tgatagaaagaagcaaaga |
41801925 |
T |
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| Q |
201 |
cacgaatcaaatttaatttggtttatctttaccacatgaaagcagttatcttttttgcaaatcattatgttcatatcgacaaacacctcagtagcaacaa |
300 |
Q |
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| T |
41801924 |
cacgaatcaaatttaatttggtttatctttaccacatgaaagcagttatcttttttgcaaatcattatgttcatatcgacaaacacctcagtagcaacaa |
41801825 |
T |
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| Q |
301 |
cagttgggacattagggagtccggggaatcatcacactagaccaagaacaactacata |
358 |
Q |
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| T |
41801824 |
cagttgggacattagggagtccggggaatcatcacactagaccaagaacaactacata |
41801767 |
T |
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