View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17424_low_8 (Length: 362)
Name: NF17424_low_8
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17424_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 43102896 - 43102567
Alignment:
| Q |
18 |
cagccggttcactcgccatcgccttcgccaacatcaccggctactcagttctctccggtctctctctcggaatggaacctctttgttcacaagccttcgg |
117 |
Q |
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| T |
43102896 |
cagccggttcactcgccatcgccttcgccaacatcaccggctactcagttctctccggtctctctctcggaatggaacctctctgttcacaagccttcgg |
43102797 |
T |
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| Q |
118 |
agcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcctcttcctattactatgttccattcccatttccttcatgtggcttaacatgtca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102796 |
agcaaaccgtcctaaactcctatccttaacacttcaacgttgcatcctcttcctattactatgttccattcccatttccttcatgtggcttaacatgtca |
43102697 |
T |
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| Q |
218 |
caaatcctcatttggttgcaccagaacccaaagatcacagccatggctcacacatatctaatattctctctccctgatctcatcacaaattcattcatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43102696 |
caaatcctcatttggttgcaccagaacccaaagatcacagccatggctcacacatatctaatattctctctccctgatctcatcacaaattcattcatcc |
43102597 |
T |
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| Q |
318 |
accctatacgtatttaccttcgtgcacagg |
347 |
Q |
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| T |
43102596 |
accctatacgtatttaccttcgtgcacagg |
43102567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 33948640 - 33948749
Alignment:
| Q |
47 |
aacatcaccggctactcagttctctccggtctctctctcggaatggaacctctttgttcacaagccttcggagcaaaccgtcctaaactcctatccttaa |
146 |
Q |
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| T |
33948640 |
aacataaccggttattcagttctttctggtttatctttaggtatggaacctctttgttctcaagcctttggtgctaaccgtccaaaacttctatcattaa |
33948739 |
T |
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| Q |
147 |
cacttcaacg |
156 |
Q |
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| T |
33948740 |
cacttcaacg |
33948749 |
T |
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