View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17424_low_9 (Length: 361)

Name: NF17424_low_9
Description: NF17424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17424_low_9
NF17424_low_9
[»] chr2 (5 HSPs)
chr2 (15-347)||(5917829-5918161)
chr2 (15-347)||(36310461-36310796)
chr2 (15-85)||(14035771-14035841)
chr2 (22-85)||(13895144-13895207)
chr2 (17-88)||(23361848-23361919)
[»] chr6 (2 HSPs)
chr6 (15-347)||(16546323-16546655)
chr6 (15-176)||(17831645-17831806)
[»] chr1 (2 HSPs)
chr1 (15-347)||(35570791-35571126)
chr1 (16-88)||(4345129-4345201)
[»] chr5 (4 HSPs)
chr5 (15-347)||(22480379-22480714)
chr5 (18-85)||(16840980-16841047)
chr5 (15-85)||(33231601-33231671)
chr5 (16-88)||(22809140-22809212)
[»] chr7 (1 HSPs)
chr7 (15-347)||(37637574-37637906)
[»] chr4 (5 HSPs)
chr4 (18-222)||(16564533-16564739)
chr4 (18-253)||(15617810-15618049)
chr4 (236-345)||(16564457-16564566)
chr4 (16-88)||(22697873-22697945)
chr4 (22-88)||(24037091-24037157)
[»] scaffold0394 (1 HSPs)
scaffold0394 (15-176)||(9618-9780)
[»] chr3 (3 HSPs)
chr3 (25-194)||(16247674-16247855)
chr3 (22-88)||(51126260-51126326)
chr3 (16-84)||(7010798-7010866)
[»] chr8 (4 HSPs)
chr8 (22-88)||(19647333-19647399)
chr8 (22-88)||(192527-192593)
chr8 (22-88)||(720131-720197)
chr8 (22-88)||(881238-881304)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 5917829 - 5918161
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5917829 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 5917928  T
Q  115 tcatcttcttcttcttgtgtattgtgttccaattgttccttccaaacgttcattttaataaagtggacctgtgtgtaaatgacaatatataaacacacca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5917929 tcatcttcttcttcttgtgtattgtgttccaattgttccttccaaaagttcattttaataaagtggacatgtgtgtaaatgacaatatataaacacacca 5918028  T
Q  215 tccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgcatt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918029 tccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgcatt 5918128  T
Q  315 gtatacccttgagcccataactatcttgtttgt 347  Q
    |||||||||||||||||||||||||||||||||    
T  5918129 gtatacccttgagcccataactatcttgtttgt 5918161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 36310796 - 36310461
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36310796 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 36310697  T
Q  115 tcatcttcttcttctt---gtgtattgtgttccaattgttccttccaaacgttcattttaataaagtggacctgtgtgtaaatgacaatatataaacaca 211  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  36310696 tcatcttcttcttcttcttgtgtattgtgttccaattgttccttccaaacattcattttaataaagtggacctgtgtgtaaatgacaatatataaacacg 36310597  T
Q  212 ccatccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36310596 ccatccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgc 36310497  T
Q  312 attgtatacccttgagcccataactatcttgtttgt 347  Q
    |||| |||||||||||||||||| ||||||||||||    
T  36310496 attgcatacccttgagcccataattatcttgtttgt 36310461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 14035841 - 14035771
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcag 85  Q
    |||||| ||||||||||||||||| || |||||||||||||  ||| ||||||||||||||| ||||||||    
T  14035841 acctgttagctcactagttctacaaggttctttgcataaatggtttattgcatactcaccaactagtgcag 14035771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 13895207 - 13895144
Alignment:
Q  22 agctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcag 85  Q
    ||||||||||||||||| || |||||||||||||  ||| ||||||||||||||| ||||||||    
T  13895207 agctcactagttctacaaggttctttgcataaatggtttattgcatactcaccaactagtgcag 13895144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 23361848 - 23361919
Alignment:
Q  17 ctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||   ||||||||||| | |||||||||||    
T  23361848 ctgttagctcactagttctacatggctctttacataaatgttttacagcatactcacccattagtgcagcca 23361919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 16546655 - 16546323
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16546655 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 16546556  T
Q  115 tcatcttcttcttcttgtgtattgtgttccaattgttccttccaaacgttcattttaataaagtggacctgtgtgtaaatgacaatatataaacacacca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16546555 tcatcttcttcttcttgtgtattgtgttccaattgttccttccaaacattcattttaataaagtgaacctgtgtgtaaatgacaatatataaacacacca 16546456  T
Q  215 tccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgcatt 314  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16546455 tccattatgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgcatt 16546356  T
Q  315 gtatacccttgagcccataactatcttgtttgt 347  Q
    |||||||||||||||||||| ||||||||||||    
T  16546355 gtatacccttgagcccataattatcttgtttgt 16546323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 17831645 - 17831806
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 114  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||    
T  17831645 acctgtgagctcactagttctacatggctctttgcataaattttttgttgcatactcaccaagtaatgcagccaaaaaataggattcttgaaatatatca 17831744  T
Q  115 tcatcttcttcttcttgtgtattgtgttccaattgttccttccaaacgttcattttaataaa 176  Q
    |||||||||||||||||||||||||||||||| ||||| |||||| | ||||||| ||||||    
T  17831745 tcatcttcttcttcttgtgtattgtgttccaaatgttcattccaaccattcatttgaataaa 17831806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 35570791 - 35571126
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35570791 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 35570890  T
Q  115 tcatctt---cttcttcttgtgtattgtgttccaattgttccttccaaacgttcattttaataaagtggacctgtgtgtaaatgacaatatataaacaca 211  Q
    |||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  35570891 tcatcttcttcttcttcttgtgtattgtgttccaattgttccttccaaacattcattttaataaagtggacctgtgtgtaaatgacaatatataaacacg 35570990  T
Q  212 ccatccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35570991 ccatccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgc 35571090  T
Q  312 attgtatacccttgagcccataactatcttgtttgt 347  Q
    |||| |||||||||||||||||| ||||||||||||    
T  35571091 attgcatacccttgagcccataattatcttgtttgt 35571126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 4345201 - 4345129
Alignment:
Q  16 cctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||    ||||||||||| | |||||||||||    
T  4345201 cctgttagctcactagttctacatggctctttacataaatgtttcacagcatactcacccattagtgcagcca 4345129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 22480714 - 22480379
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22480714 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgtagccaaaatataggattcttcaaatgtatca 22480615  T
Q  115 tcatcttcttcttctt---gtgtattgtgttccaattgttccttccaaacgttcattttaataaagtggacctgtgtgtaaatgacaatatataaacaca 211  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  22480614 tcatcttcttcttcttcttgtgtattgtgttccaattgttccttccaaacattcattttaataaagtggacctgtgtgtaaatgacaatatataaacacg 22480515  T
Q  212 ccatccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22480514 ccatccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgc 22480415  T
Q  312 attgtatacccttgagcccataactatcttgtttgt 347  Q
    |||| |||||||||||||||||| ||||||||||||    
T  22480414 attgcatacccttgagcccataattatcttgtttgt 22480379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 16841047 - 16840980
Alignment:
Q  18 tgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcag 85  Q
    ||||||| |||||||||||||||||||||| |||||||  |||||||||| |||||||||||||||||    
T  16841047 tgtgagcacactagttctacatggctctttacataaattatttgttgcatgctcaccaagtagtgcag 16840980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 33231671 - 33231601
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcag 85  Q
    |||||| ||||||||||||||||| || |||||||||||||  ||| ||||||||||||||| ||||||||    
T  33231671 acctgttagctcactagttctacaaggttctttgcataaatggtttattgcatactcaccaactagtgcag 33231601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 22809212 - 22809140
Alignment:
Q  16 cctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||     |||||||||| | |||||||||||    
T  22809212 cctgttagctcactagttctacatggctctttacataaatgtttcacaacatactcacccattagtgcagcca 22809140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 37637906 - 37637574
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatca 114  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37637906 acctgtgagctcactagttctacatggctctttacataaat-ttttgttgcatactcaccaagtagtgcagtcaaaatataggattcttcaaatgtatca 37637808  T
Q  115 tcatcttcttcttcttgtgtattgtgttccaattgttccttccaaacgttcattttaataaag-tggacctgtgtgtaaatgacaatatataaacacacc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  37637807 tcatcttcttcttcttgtgtattgtgttccaattgttccttccatacattcattttaataaagatggacttgtgtgtaaatgacaatatataaacacacc 37637708  T
Q  214 atccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgcat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37637707 atccattgtgaagtaaagcaaataaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgcat 37637608  T
Q  314 tgtatacccttgagcccataactatcttgtttgt 347  Q
    ||||||||||||||||||||| ||||||||||||    
T  37637607 tgtatacccttgagcccataaatatcttgtttgt 37637574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 16564739 - 16564533
Alignment:
Q  18 tgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgtatcatca 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16564739 tgtgagctcactagttctacatggcgctttgcataaatattttgttgcatactcaccaagtagtgcagcgaaaatataggattcttcaaatgtatcatca 16564640  T
Q  118 tcttcttcttcttgtgtattgtgttccaattgttccttccaaacgttcattttaataaag-tggacctgtgtgtaaatgacaatatataaacac-accat 215  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  16564639 tcttcttcctcttgtgtattgtgttccaattgttccttccaaacattcattttaataaagatggacctgtgtgtaaatgacaatatataaacactaccat 16564540  T
Q  216 ccattgt 222  Q
    |||||||    
T  16564539 ccattgt 16564533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 15618049 - 15617810
Alignment:
Q  18 tgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagccaaaatataggattcttcaaatgt---atca 114  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||| ||| |||||||||||| |   ||||    
T  15618049 tgtgagctcactggttctacatggctctttgcataaaatttttgttgcatactcaccatgtagtgcagtcaaaaaatatgattcttcaaatatatcatca 15617950  T
Q  115 tcatcttcttcttcttgtgtattgtgttccaattgttccttccaaacgttcattttaataaag-tggacctgtgtgtaaatgacaatatataaacacacc 213  Q
    |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  15617949 tcatcttcttcttcttgtgtattgtgttccaaatgttccttccaaccattcattttaataaagatggacctgtgtgtaaatcacaatatataaactcacc 15617850  T
Q  214 atccattgtgaagtaaagcaaataaatcacaatatataaa 253  Q
    | ||||||||||||||||||| ||||||||||||||||||    
T  15617849 acccattgtgaagtaaagcaagtaaatcacaatatataaa 15617810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 16564566 - 16564457
Alignment:
Q  236 taaatcacaatatataaacactaccatccattgtatcccatctgtcagtataatacatgcaccaaaatacatgtgcattgtatacccttgagcccataac 335  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16564566 taaatgacaatatataaacactaccatccattgtatcccatctgccagtataatacatgcaccaaaatacatgtgcattgtatacccttgagcccataat 16564467  T
Q  336 tatcttgttt 345  Q
    ||| ||||||    
T  16564466 tattttgttt 16564457  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 22697945 - 22697873
Alignment:
Q  16 cctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||    ||||||||||| | |||||||||||    
T  22697945 cctgttagctcactagttctacatggctctttacataaatgtttcacagcatactcacccattagtgcagcca 22697873  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 24037091 - 24037157
Alignment:
Q  22 agctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    ||||||||||||| ||| || |||||||||||||  |||  |||||||||||||| |||||||||||    
T  24037091 agctcactagttcgacaaggttctttgcataaatggtttactgcatactcaccaactagtgcagcca 24037157  T

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Target: scaffold0394 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 9618 - 9780
Alignment:
Q  15 acctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcag-ccaaaatataggattcttcaaatgtatc 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||| |||| ||||    
T  9618 acctgtgagctcactagttctacatggctctttgcataaaaattttgttgcatactcaccaagtaatgcagaccaaaaaataggattcttgaaatatatc 9717  T
Q  114 atcatcttcttcttcttgtgtattgtgttccaattgttccttccaaacgttcattttaataaa 176  Q
    || |||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||    
T  9718 ataatcttcttcttcttgtgtattgtgttccaaatgttcattccaaccattcattttaataaa 9780  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 16247674 - 16247855
Alignment:
Q  25 tcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagc------caaaatataggattcttcaaatgta------t 112  Q
    |||||||||||||||||||||||||||   | |||| |||||||||||||||||||||||||       |||| | |||||||||||||| ||      |    
T  16247674 tcactagttctacatggctctttgcat-tttttttttttgcatactcaccaagtagtgcagcaaaaaaaaaaaaaaaggattcttcaaatatatcattct 16247772  T
Q  113 catcatcttcttcttcttgtgtattgtgttccaattgttccttccaaacgttcattttaataaagtgg-acctgtgtgtaaat 194  Q
    |||| |||||||||||||||||||||||||| || | ||| || ||| | |||||||||||| || || || |||||||||||    
T  16247773 catcttcttcttcttcttgtgtattgtgttctaaatattcttttcaaccattcattttaatagagaggaacttgtgtgtaaat 16247855  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 51126260 - 51126326
Alignment:
Q  22 agctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    ||||||||||||| ||| || |||||||||||||  |||  |||||||||||||| |||||||||||    
T  51126260 agctcactagttcgacaaggttctttgcataaatggtttactgcatactcaccaactagtgcagcca 51126326  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 7010866 - 7010798
Alignment:
Q  16 cctgtgagctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgca 84  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||    ||||||||||| | |||||||    
T  7010866 cctgttagctcactagttctacatggctctttacataaatgtttcacagcatactcacccattagtgca 7010798  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 19647399 - 19647333
Alignment:
Q  22 agctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    |||||||||||||||||||||||||| ||||||| ||| || ||||||||||| | |||||||||||    
T  19647399 agctcactagttctacatggctctttacataaatgtttcgtagcatactcacccattagtgcagcca 19647333  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 192593 - 192527
Alignment:
Q  22 agctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    ||||||||||||| ||| || |||||||||||||  |||  |||||||||||||| |||||||||||    
T  192593 agctcactagttcgacaaggttctttgcataaatggtttactgcatactcaccaactagtgcagcca 192527  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 720197 - 720131
Alignment:
Q  22 agctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    ||||||||||||| ||| || |||||||||||||  |||  |||||||||||||| |||||||||||    
T  720197 agctcactagttcgacaaggttctttgcataaatggtttactgcatactcaccaactagtgcagcca 720131  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 881304 - 881238
Alignment:
Q  22 agctcactagttctacatggctctttgcataaatattttgttgcatactcaccaagtagtgcagcca 88  Q
    ||||||||||||| ||| || |||||||||||||  |||  |||||||||||||| |||||||||||    
T  881304 agctcactagttcgacaaggttctttgcataaatggtttactgcatactcaccaactagtgcagcca 881238  T

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