View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17425_high_3 (Length: 352)
Name: NF17425_high_3
Description: NF17425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17425_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 92 - 339
Target Start/End: Complemental strand, 3703578 - 3703332
Alignment:
| Q |
92 |
gttcctcagaagttttgacaaatcactcatacacaaaaaagaaactcaccagctctgacatagtccacatcaaacgtatagtaattgggtttctttgtct |
191 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3703578 |
gttcctcagaagttttgacaaatctctcaaacacaa----gaaactcaccagctctgacatagtccacatcaaacgtatagtaattgagtttctttgtct |
3703483 |
T |
|
| Q |
192 |
ttagagcaactttaatgatcnnnnnnnaaagattattttgagtctcattagccacatcaaacgctcaggaatttgtggtcgcaaatttgatgactgatga |
291 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703482 |
ttagagcaactttaatgatctttttttaaagattattttgagtctcattagccacatcaaacgctcaggaatttgtggtcgcaaatttgatgactgatga |
3703383 |
T |
|
| Q |
292 |
gcaatggcaccactgtttttcctttacct---aagtcatcatattatgaaa |
339 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
3703382 |
gcaatggcaccactgttcttcctttacctccaaagtcatcatattatgaaa |
3703332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 3698631 - 3698574
Alignment:
| Q |
96 |
ctcagaagttttgacaaatcactcatacacaaaaaagaaactcaccagctctgacatagt |
155 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
3698631 |
ctcaaaagttttgacaaatcactcaaacacaaaa--gaaactcaccagctctgacatagt |
3698574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 3698720 - 3698680
Alignment:
| Q |
7 |
cacccctcaagtagatcttccttgcaatggaagctgcggca |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698720 |
cacccctcaagtagatcttccttgcaatggaagctgcggca |
3698680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 3703664 - 3703628
Alignment:
| Q |
7 |
cacccctcaagtagatcttccttgcaatggaagctgc |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703664 |
cacccctcaagtagatcttccttgcaatggaagctgc |
3703628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University